Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ITG12_RS11145 Genome accession   NZ_CP080238
Coordinates   2409803..2411326 (+) Length   507 a.a.
NCBI ID   WP_039975999.1    Uniprot ID   -
Organism   Vibrio sp. ED002     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2404803..2416326
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ITG12_RS11130 (ITG12_11050) ilvE 2406447..2407385 (-) 939 WP_038875206.1 branched-chain-amino-acid transaminase -
  ITG12_RS11135 (ITG12_11055) ilvM 2407398..2407682 (-) 285 WP_005440786.1 acetolactate synthase 2 small subunit -
  ITG12_RS11140 (ITG12_11060) ilvG 2407694..2409340 (-) 1647 WP_038870177.1 acetolactate synthase 2 catalytic subunit -
  ITG12_RS11145 (ITG12_11065) comM 2409803..2411326 (+) 1524 WP_039975999.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ITG12_RS11150 (ITG12_11070) - 2411373..2412329 (-) 957 WP_038881678.1 DUF2860 domain-containing protein -
  ITG12_RS11155 (ITG12_11075) - 2412495..2413373 (+) 879 WP_039976002.1 acyltransferase -
  ITG12_RS11160 (ITG12_11080) - 2413437..2414039 (-) 603 WP_248873071.1 thiol:disulfide interchange protein DsbA/DsbL -
  ITG12_RS11165 (ITG12_11085) - 2414075..2415061 (-) 987 WP_038870169.1 serine/threonine protein kinase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54831.86 Da        Isoelectric Point: 8.7809

>NTDB_id=591567 ITG12_RS11145 WP_039975999.1 2409803..2411326(+) (comM) [Vibrio sp. ED002]
MGLAIIHSRASVGVQAPSVSVEVHISNGMPGFTLVGLPETTVKESKDRVRSAIINSNFQFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASEQIATDKLKNYEFVGELALSGGLRPVKGVLPAALAANKSQRHLVVPHANGDQAALVGKEQHKSAQSL
LEVCAELCGQHKLELHQAPKRNVVEKHGRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPEMTD
EEAMETASVASLTQSEINEHNWKTRPLRSPHHSSSMAALVGGGSVPRPGEISLAHNGLLFLDEMPEFDRKVLDSLREPLE
SGEIIISRAQGKTRFPARFQLVGALNPSPTGYYEGNQSRTNPQAILRYLGRLSGPLLDRFDMSLEIPALPKGTLAEGGDR
GEPTSVVKQRVNLARESMLQRSGKVNALLGSREIEAFCPLQKSDAEFLENALHRLGLSIRAYHRIIKVARTIADLEGSAA
IERTHLAEALGYRAMDRLLKQLTAQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=591567 ITG12_RS11145 WP_039975999.1 2409803..2411326(+) (comM) [Vibrio sp. ED002]
ATGGGGCTGGCAATCATTCATAGTCGAGCAAGTGTGGGTGTGCAAGCGCCATCGGTAAGCGTGGAAGTCCACATCAGCAA
TGGGATGCCGGGCTTTACACTCGTCGGTCTACCAGAAACAACAGTAAAAGAATCTAAAGATCGTGTCCGCAGTGCGATCA
TTAATTCCAACTTCCAATTTCCTGCCAAGCGAATCACGGTAAATTTGGCCCCAGCAGATTTACCCAAGGAAGGTGGCCGC
TTCGATCTACCGATTGCGTTGGGAATTTTAGCCGCTTCAGAGCAAATCGCGACAGATAAGCTTAAAAACTACGAATTTGT
TGGCGAATTGGCACTTTCTGGCGGATTAAGACCCGTAAAAGGCGTCTTACCCGCCGCGCTGGCCGCAAATAAAAGTCAGC
GTCATTTAGTTGTGCCCCATGCCAACGGTGATCAAGCCGCTTTGGTGGGGAAAGAACAACATAAATCCGCGCAGTCTTTA
CTGGAAGTGTGCGCTGAGCTTTGTGGTCAGCATAAGTTGGAATTACACCAAGCACCAAAGCGTAATGTCGTCGAAAAGCA
TGGTCGAGATCTGCAAGACATCATTGGGCAGCAACAAGGTAAACGTGCCTTAGAGATAGCGGCGGCAGGTAATCACAACT
TACTTTTTCTTGGCCCTCCCGGAACGGGTAAAACCATGTTGGCTTCACGACTGTGTGATTTATTGCCTGAGATGACCGAT
GAAGAAGCGATGGAAACGGCATCAGTAGCGTCGCTAACTCAAAGTGAAATCAATGAACATAATTGGAAAACACGCCCGCT
GCGCAGCCCGCATCATTCTAGTTCAATGGCGGCATTGGTTGGGGGAGGTTCAGTGCCTAGACCCGGTGAAATTTCATTGG
CGCATAATGGACTGTTGTTTTTGGATGAGATGCCAGAGTTTGATCGTAAAGTACTCGACTCTTTAAGGGAGCCATTAGAG
TCGGGGGAGATCATTATTTCACGTGCGCAGGGTAAAACCCGTTTTCCGGCTCGATTTCAGTTGGTCGGAGCGCTCAACCC
GAGCCCTACGGGTTATTACGAAGGTAACCAATCTCGTACAAATCCCCAGGCGATTTTGCGTTATCTTGGTCGACTATCAG
GGCCGTTGCTTGACCGATTTGATATGTCGTTAGAGATTCCTGCACTGCCGAAAGGTACGTTAGCTGAAGGAGGTGATAGA
GGTGAGCCAACCTCCGTAGTAAAACAAAGGGTCAACTTAGCCAGAGAGAGTATGTTGCAACGCAGTGGTAAGGTAAATGC
CCTGTTGGGGAGCCGAGAAATTGAAGCTTTCTGCCCATTACAAAAATCCGATGCGGAATTTTTAGAGAATGCGCTGCATC
GTCTTGGGTTATCGATTCGTGCCTATCACCGGATTATCAAAGTTGCGCGGACGATTGCTGATCTGGAGGGCTCTGCAGCG
ATTGAACGAACGCATCTTGCAGAAGCGTTAGGGTACAGAGCGATGGATAGATTGCTCAAGCAGTTAACCGCACAGGCGGT
ATAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

94.477

100

0.945
  comM Vibrio cholerae strain A1552

84.813

100

0.848
  comM Haemophilus influenzae Rd KW20

65.878

100

0.659
  comM Glaesserella parasuis strain SC1401

64.314

100

0.647
  comM Legionella pneumophila str. Paris

49.395

97.83

0.483
  comM Legionella pneumophila strain ERS1305867

49.395

97.83

0.483
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.685

100

0.448