Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   MSA_RS04610 Genome accession   NC_021486
Coordinates   828617..829564 (+) Length   315 a.a.
NCBI ID   WP_016480661.1    Uniprot ID   -
Organism   Streptococcus agalactiae ILRI005     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 823617..834564
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MSA_RS04585 (MSA_9430) - 823966..824646 (+) 681 WP_000656582.1 VIT family protein -
  MSA_RS04590 (MSA_9440) - 824797..825498 (+) 702 WP_001263957.1 glucosamine-6-phosphate deaminase -
  MSA_RS04595 (MSA_9450) - 825570..826526 (-) 957 WP_000523783.1 glutathione S-transferase family protein -
  MSA_RS04600 (MSA_9460) - 826622..827341 (+) 720 WP_001234964.1 pseudouridine synthase -
  MSA_RS04605 (MSA_9480) - 827414..828565 (+) 1152 WP_016480660.1 MFS transporter -
  MSA_RS04610 (MSA_9490) coiA 828617..829564 (+) 948 WP_016480661.1 competence protein CoiA family protein Machinery gene
  MSA_RS04615 (MSA_9500) pepF 829580..831385 (+) 1806 WP_016480662.1 oligoendopeptidase F Regulator
  MSA_RS04620 (MSA_9510) - 831580..832206 (+) 627 WP_000736938.1 HAD-IA family hydrolase -
  MSA_RS04625 (MSA_9520) - 832280..832987 (+) 708 WP_016480663.1 O-methyltransferase -
  MSA_RS04630 (MSA_9530) prsA 833048..833977 (+) 930 WP_000857817.1 peptidylprolyl isomerase PrsA -

Sequence

Protein


Download         Length: 315 a.a.        Molecular weight: 37869.60 Da        Isoelectric Point: 9.5891

>NTDB_id=59120 MSA_RS04610 WP_016480661.1 828617..829564(+) (coiA) [Streptococcus agalactiae ILRI005]
MLIAKDRQGNLINLLESHPGKGQYFCPTCCSAVRLKAGRIMRRHFAHISLKNCQFYHENESNEHLQLKAKLYMSLSRENE
TMLEHHLPEINQFADLFVNETLALEVQCSRLSEQRLRERTKAYLQADFQVRWLLGEKLWLKHRLTNLHKQFLQFSQSIGF
HIWELDLRLEVLRLKYLIYEDLRGHVYYLSKTCPLSGDVLAFLKWPYQSKNLNFYKVKQDRNIRDYVRQQLRYGNQFWLR
KQEKAYLSGQNLLTQELMMFFPQIQPPRVDTDFCQITNSLTSFYQNFTNYYQKNKNNLDQTLYPPVFYDKIVTKN

Nucleotide


Download         Length: 948 bp        

>NTDB_id=59120 MSA_RS04610 WP_016480661.1 828617..829564(+) (coiA) [Streptococcus agalactiae ILRI005]
ATGTTAATTGCTAAAGACAGACAAGGAAATTTAATTAATCTACTCGAGTCTCATCCGGGAAAGGGACAGTATTTTTGTCC
AACTTGTTGTTCAGCTGTAAGGTTAAAAGCAGGTCGAATCATGAGAAGACACTTTGCACATATTAGTCTAAAAAATTGTC
AGTTTTATCATGAAAATGAGTCTAATGAGCACTTGCAATTAAAAGCAAAGTTATATATGAGTTTAAGTAGAGAGAATGAA
ACTATGCTCGAGCATCATTTGCCAGAAATTAATCAGTTTGCAGATTTATTTGTGAATGAGACATTGGCTTTAGAAGTTCA
GTGTAGCCGACTATCAGAGCAGCGACTCAGGGAGCGAACAAAAGCATATCTACAGGCAGACTTTCAAGTGAGATGGTTAC
TAGGGGAAAAACTCTGGTTAAAGCATCGTTTAACAAATCTACATAAACAATTTTTACAATTTTCTCAAAGTATCGGATTT
CATATTTGGGAGTTAGATTTGAGGTTAGAAGTACTGAGACTAAAATATTTGATTTACGAAGATTTACGCGGACATGTCTA
TTACTTAAGTAAAACTTGCCCTCTTAGTGGAGACGTTCTAGCATTTTTGAAGTGGCCATACCAATCAAAAAATCTAAATT
TTTATAAGGTTAAACAAGACAGAAATATCAGAGATTATGTGCGTCAGCAGTTACGCTATGGCAATCAATTTTGGTTACGA
AAACAAGAAAAGGCCTACCTTTCTGGTCAGAATCTATTAACCCAAGAGCTAATGATGTTTTTTCCTCAAATACAGCCACC
ACGTGTAGATACTGATTTTTGTCAAATAACAAATTCTCTAACATCGTTTTATCAGAATTTTACAAATTATTATCAAAAAA
ATAAGAATAACTTGGACCAAACACTTTATCCCCCTGTATTTTATGATAAAATAGTCACTAAGAATTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(1-299)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus pneumoniae TIGR4

48.734

100

0.489
  coiA Streptococcus pneumoniae Rx1

48.734

100

0.489
  coiA Streptococcus pneumoniae D39

48.734

100

0.489
  coiA Streptococcus pneumoniae R6

48.734

100

0.489
  coiA Streptococcus mitis NCTC 12261

48.734

100

0.489
  coiA Lactococcus lactis subsp. cremoris KW2

40.062

100

0.41

Multiple sequence alignment