Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   MSA_RS04615 Genome accession   NC_021486
Coordinates   829580..831385 (+) Length   601 a.a.
NCBI ID   WP_016480662.1    Uniprot ID   -
Organism   Streptococcus agalactiae ILRI005     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 824580..836385
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MSA_RS04590 (MSA_9440) - 824797..825498 (+) 702 WP_001263957.1 glucosamine-6-phosphate deaminase -
  MSA_RS04595 (MSA_9450) - 825570..826526 (-) 957 WP_000523783.1 glutathione S-transferase family protein -
  MSA_RS04600 (MSA_9460) - 826622..827341 (+) 720 WP_001234964.1 pseudouridine synthase -
  MSA_RS04605 (MSA_9480) - 827414..828565 (+) 1152 WP_016480660.1 MFS transporter -
  MSA_RS04610 (MSA_9490) coiA 828617..829564 (+) 948 WP_016480661.1 competence protein CoiA family protein Machinery gene
  MSA_RS04615 (MSA_9500) pepF 829580..831385 (+) 1806 WP_016480662.1 oligoendopeptidase F Regulator
  MSA_RS04620 (MSA_9510) - 831580..832206 (+) 627 WP_000736938.1 HAD-IA family hydrolase -
  MSA_RS04625 (MSA_9520) - 832280..832987 (+) 708 WP_016480663.1 O-methyltransferase -
  MSA_RS04630 (MSA_9530) prsA 833048..833977 (+) 930 WP_000857817.1 peptidylprolyl isomerase PrsA -
  MSA_RS04635 (MSA_9540) - 834219..834704 (+) 486 WP_000190196.1 LURP-one-related family protein -

Sequence

Protein


Download         Length: 601 a.a.        Molecular weight: 69689.62 Da        Isoelectric Point: 4.5797

>NTDB_id=59121 MSA_RS04615 WP_016480662.1 829580..831385(+) (pepF) [Streptococcus agalactiae ILRI005]
MSDNRSYIEEKYQWDLTTVFATDELWETEVVELTQAIDDAKGFSGHLLDSSQSLLEITEVELDLSRRLEKVYVYASMKND
QDTTVAKYQEFQAKATALYAKFSETFSFYEPELLQLSESDYQSFLLEMPDLQKYDHFFEKIFANKPHVLSQNEEELLAGA
SEIFGAAGETFEILDNADMVFPVVKNAKGEEVELTHGNFISLMESSDRTVRKEAYQAMYSTYEQFQHTYAKTLQTNVKSQ
NFKARVHHYQSARQSALSANFIPEEVYETLIKTVNHHLPLLHRYMKLRQKVLGLDDLKMYDVYTPLSQMDMSFTYDEALK
KSEEVLAIFGEAYSERVHRAFTERWIDVHVNKGKRSGAYSGGSYDTNAFMLLNWQDTLDNLYTLVHETGHSLHSTFTREN
QPYVYGDYSIFLAEIASTTNENILTETLLKEVKDDKNRFAILNHYLDGFKGTIFRQTQFAEFEHAIHVADQEGQVLTSEY
LNNLYAELNEKYYGLTKEDNHFIQYEWARIPHFYYNYYVFQYATGFAAANYLAERIVNGNPEDKEAYLNYLKAGNSDYPL
NVIAKAGVDMTSADYLDAAFRVFEERLVELENLVEKGVHND

Nucleotide


Download         Length: 1806 bp        

>NTDB_id=59121 MSA_RS04615 WP_016480662.1 829580..831385(+) (pepF) [Streptococcus agalactiae ILRI005]
ATGTCAGACAATCGCTCATATATTGAAGAAAAATACCAATGGGATTTAACTACTGTCTTTGCGACTGATGAGTTATGGGA
AACTGAAGTGGTAGAGCTTACTCAAGCCATCGATGACGCAAAGGGTTTTTCAGGTCATCTGTTGGACTCAAGCCAATCTT
TATTGGAGATCACGGAGGTTGAACTAGATTTATCTCGCCGTTTAGAAAAAGTTTATGTCTATGCTTCAATGAAAAATGAC
CAAGACACCACTGTTGCGAAATATCAAGAATTTCAAGCGAAAGCGACAGCGCTCTATGCAAAATTTAGTGAAACATTTTC
GTTTTACGAGCCAGAACTATTGCAACTTTCAGAGTCTGATTACCAGTCATTCCTTTTAGAAATGCCTGACTTGCAAAAAT
ATGATCATTTCTTTGAGAAAATATTTGCAAATAAACCTCATGTCTTATCTCAAAACGAAGAAGAATTGTTAGCTGGTGCT
AGTGAGATTTTTGGAGCAGCTGGTGAGACATTTGAAATCCTTGATAATGCAGATATGGTCTTCCCAGTTGTAAAAAATGC
AAAAGGTGAGGAAGTTGAGCTTACACATGGTAATTTCATTTCCCTTATGGAATCTAGCGATAGGACGGTTCGAAAAGAAG
CATATCAAGCTATGTATAGCACATATGAACAATTCCAGCATACTTACGCTAAAACATTACAAACAAATGTGAAATCTCAA
AATTTTAAAGCTCGTGTGCATCATTATCAATCAGCACGCCAATCAGCTCTATCTGCCAATTTTATTCCAGAAGAGGTCTA
CGAAACTCTAATTAAGACAGTTAATCATCATTTACCTCTCTTACATCGTTATATGAAGTTGCGTCAAAAAGTTCTTGGGC
TAGATGATTTGAAGATGTATGACGTATATACACCCCTTTCTCAAATGGATATGAGTTTTACTTATGATGAAGCTCTAAAA
AAATCAGAGGAGGTTCTGGCTATTTTTGGCGAAGCATATTCTGAACGTGTTCATCGTGCTTTTACTGAACGTTGGATTGA
TGTCCATGTTAACAAAGGAAAGAGGTCAGGCGCTTATTCAGGTGGATCTTATGACACTAATGCTTTCATGCTTCTTAACT
GGCAAGATACTTTAGACAATCTTTATACGCTGGTGCATGAAACTGGACATAGTCTACACTCGACGTTTACTCGTGAAAAT
CAACCTTATGTTTATGGTGATTATTCTATTTTCCTAGCTGAAATTGCATCAACAACAAATGAAAATATATTAACAGAAAC
CCTTTTGAAAGAAGTTAAAGATGATAAAAATCGCTTTGCAATTCTCAATCATTATTTGGACGGTTTCAAAGGAACAATTT
TTAGACAAACACAGTTCGCTGAATTCGAACATGCCATTCATGTAGCTGATCAGGAGGGGCAAGTACTAACTAGCGAATAC
TTAAACAACCTTTACGCTGAGCTTAATGAAAAATATTATGGTTTGACTAAAGAAGATAATCATTTTATTCAATATGAATG
GGCAAGAATTCCACACTTTTACTACAATTATTATGTTTTCCAATATGCAACCGGCTTCGCAGCAGCAAATTATTTAGCAG
AGCGTATTGTAAACGGTAATCCGGAGGATAAAGAGGCCTACCTAAATTACCTTAAAGCTGGGAATTCAGATTACCCTCTA
AACGTCATTGCTAAAGCTGGTGTTGATATGACTAGTGCAGACTATCTGGATGCAGCTTTTAGAGTATTTGAAGAACGTTT
AGTGGAACTTGAAAATCTTGTAGAAAAAGGCGTCCATAATGATTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-181)

Peptidase family M3 (Peptidase_M3)

(202-581)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

71.452

99.667

0.712

Multiple sequence alignment