Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KZX48_RS01600 Genome accession   NZ_CP080107
Coordinates   346439..346969 (+) Length   176 a.a.
NCBI ID   WP_029740211.1    Uniprot ID   A0A263VT06
Organism   Enterobacter asburiae strain WW-19C     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 337195..365575 346439..346969 within 0


Gene organization within MGE regions


Location: 337195..365575
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KZX48_RS01545 (KZX48_01545) - 337195..337485 (-) 291 WP_032662594.1 hypothetical protein -
  KZX48_RS01550 (KZX48_01550) - 337486..337893 (-) 408 WP_033144411.1 hypothetical protein -
  KZX48_RS01555 (KZX48_01555) - 337959..338441 (-) 483 WP_094935055.1 ribonuclease domain-containing protein -
  KZX48_RS01560 (KZX48_01560) - 338460..338909 (-) 450 WP_048976345.1 lysozyme -
  KZX48_RS01565 (KZX48_01565) - 338909..339511 (-) 603 WP_094935054.1 DUF2589 domain-containing protein -
  KZX48_RS01570 (KZX48_01570) - 339587..340144 (-) 558 WP_023334176.1 DUF2589 domain-containing protein -
  KZX48_RS01575 (KZX48_01575) tyrB 340351..341544 (+) 1194 WP_094935053.1 aromatic amino acid transaminase -
  KZX48_RS01580 (KZX48_01580) aphA 341762..342475 (+) 714 WP_032662578.1 acid phosphatase AphA -
  KZX48_RS01585 (KZX48_01585) - 342589..343005 (+) 417 WP_094935052.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  KZX48_RS01590 (KZX48_01590) - 343008..343361 (+) 354 WP_094935051.1 MmcQ/YjbR family DNA-binding protein -
  KZX48_RS01595 (KZX48_01595) uvrA 343365..346187 (-) 2823 WP_219773445.1 excinuclease ABC subunit UvrA -
  KZX48_RS01600 (KZX48_01600) ssb 346439..346969 (+) 531 WP_029740211.1 single-stranded DNA-binding protein SSB1 Machinery gene
  KZX48_RS01605 (KZX48_01605) - 347128..348375 (+) 1248 WP_048216965.1 site-specific integrase -
  KZX48_RS01610 (KZX48_01610) - 348362..349924 (+) 1563 WP_048216964.1 site-specific integrase -
  KZX48_RS01615 (KZX48_01615) - 349917..351950 (+) 2034 WP_048216963.1 integrase -
  KZX48_RS01620 (KZX48_01620) - 351943..352362 (+) 420 WP_048216962.1 hypothetical protein -
  KZX48_RS01625 (KZX48_01625) - 352563..354254 (-) 1692 WP_048216961.1 UvrD-helicase domain-containing protein -
  KZX48_RS01630 (KZX48_01630) - 354257..356383 (-) 2127 WP_059347289.1 ATP-dependent endonuclease -
  KZX48_RS01635 (KZX48_01635) - 356387..356852 (-) 466 Protein_318 tyrosine-type recombinase/integrase -
  KZX48_RS01640 (KZX48_01640) - 357112..357354 (+) 243 WP_048216959.1 hypothetical protein -
  KZX48_RS01645 (KZX48_01645) - 357639..358244 (-) 606 WP_048216958.1 hypothetical protein -
  KZX48_RS01650 (KZX48_01650) - 358604..358936 (+) 333 WP_048216957.1 hypothetical protein -
  KZX48_RS01655 (KZX48_01655) - 358933..360174 (+) 1242 WP_081051438.1 PfkB family carbohydrate kinase -
  KZX48_RS01660 (KZX48_01660) - 360171..360776 (+) 606 WP_048216956.1 7-cyano-7-deazaguanine synthase -
  KZX48_RS01665 (KZX48_01665) - 360754..361428 (+) 675 WP_223862018.1 dehydrogenase -
  KZX48_RS01670 (KZX48_01670) - 361372..362217 (-) 846 WP_048216955.1 8-oxoguanine DNA glycosylase -
  KZX48_RS01675 (KZX48_01675) - 362214..362780 (-) 567 WP_081051437.1 DNA adenine methylase -
  KZX48_RS01680 (KZX48_01680) - 363308..364672 (+) 1365 WP_048216953.1 anti-phage deoxyguanosine triphosphatase -
  KZX48_RS01685 (KZX48_01685) - 365330..365575 (+) 246 WP_048216952.1 hypothetical protein -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18792.81 Da        Isoelectric Point: 5.2456

>NTDB_id=591121 KZX48_RS01600 WP_029740211.1 346439..346969(+) (ssb) [Enterobacter asburiae strain WW-19C]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQAGAEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQSQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAP
APSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=591121 KZX48_RS01600 WP_029740211.1 346439..346969(+) (ssb) [Enterobacter asburiae strain WW-19C]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAGATGAAAGAGCAGACCG
AATGGCACCGTGTAGTGCTGTTTGGCAAACTGGCCGAAGTGGCCGGTGAGTATCTGCGTAAAGGTTCTCAGGTCTATATC
GAAGGCCAGCTGCGTACCCGCAAATGGACCGATCAGGCCGGCGCTGAGAAGTACACCACAGAAGTCGTGGTCAACGTGGG
CGGCACCATGCAGATGCTGGGTGGCCGTCAGGGCGGTGGTGCACCGGCAGGTGGCGGTCAGAGCCAGCAGCAGGGCGGTT
GGGGTCAGCCTCAGCAGCCGCAGGGCGGCAACCAGTTCAGCGGCGGCGCACAGTCTCGTCCGCAGCAGCAGTCTGCTCCG
GCGCCGTCTAACGAACCGCCAATGGATTTCGACGACGACATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A263VT06

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

75.556

100

0.773
  ssb Glaesserella parasuis strain SC1401

56.216

100

0.591
  ssb Neisseria meningitidis MC58

46.629

100

0.472
  ssb Neisseria gonorrhoeae MS11

46.629

100

0.472
  ssbA Bacillus subtilis subsp. subtilis str. 168

35.556

100

0.364