Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   KZR01_RS11430 Genome accession   NZ_CP080098
Coordinates   261600..262616 (-) Length   338 a.a.
NCBI ID   WP_026000383.1    Uniprot ID   A0A3A1Q0R6
Organism   Vibrio harveyi strain     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 256600..267616
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KZR01_RS11405 aroK 257456..257974 (-) 519 WP_005451507.1 shikimate kinase AroK -
  KZR01_RS11410 pilQ 258164..259915 (-) 1752 WP_005451505.1 type IV pilus secretin PilQ Machinery gene
  KZR01_RS11415 pilP 259950..260465 (-) 516 WP_005451501.1 pilus assembly protein PilP Machinery gene
  KZR01_RS11420 pilO 260455..261048 (-) 594 WP_005451500.1 type 4a pilus biogenesis protein PilO Machinery gene
  KZR01_RS11425 pilN 261041..261616 (-) 576 WP_005451499.1 PilN domain-containing protein Machinery gene
  KZR01_RS11430 pilM 261600..262616 (-) 1017 WP_026000383.1 type IV pilus assembly protein PilM Machinery gene
  KZR01_RS11435 - 262795..265365 (+) 2571 WP_050935720.1 penicillin-binding protein 1A -
  KZR01_RS11440 oxyR 265432..266340 (-) 909 WP_005451495.1 DNA-binding transcriptional regulator OxyR -
  KZR01_RS11445 - 266515..267243 (+) 729 WP_005451494.1 redoxin family protein -

Sequence

Protein


Download         Length: 338 a.a.        Molecular weight: 38066.43 Da        Isoelectric Point: 6.4206

>NTDB_id=591067 KZR01_RS11430 WP_026000383.1 261600..262616(-) (pilM) [Vibrio harveyi strain]
MDKLLVTGIDIGHNSLKAVVLKPNGNSYALLGYKEIILKEGIVAENNTINHQEIVKTLKEIRKELPFWARRVAISVPDNA
VISKKLQIEQNLEESEKEFAVVQAFSHQSPFPVEELSLDFVKLDADEQMRGTDSYQVFATRKDVVETRVDALQKSGLKTV
LVDVHSQSLGHIWKLAVERFPEKSKYCLLDISALSSSFTMFTEQSELFHKEFPYGTRTSNDLFQQDPLAEDSQVATEQFN
RQIVDRVKRQIQLYTSINGNQDIKGIWLSGEGAATPMLAEELSSQLALECELLNPLGLFEMKVSKRKRRAADWQHFTAAA
GLAVRGIQWLGGKHAVSH

Nucleotide


Download         Length: 1017 bp        

>NTDB_id=591067 KZR01_RS11430 WP_026000383.1 261600..262616(-) (pilM) [Vibrio harveyi strain]
ATGGATAAGCTATTAGTTACGGGCATAGATATTGGCCATAACAGCCTCAAAGCCGTGGTACTTAAACCCAATGGCAACAG
TTACGCCTTATTGGGTTACAAAGAAATAATACTTAAGGAAGGTATTGTCGCTGAAAATAACACCATAAATCATCAAGAAA
TTGTAAAGACCCTTAAAGAGATAAGAAAAGAGCTGCCATTTTGGGCTCGACGGGTCGCAATTTCTGTTCCTGATAATGCC
GTGATCAGCAAGAAGCTGCAAATTGAGCAGAACTTGGAGGAGAGTGAGAAAGAGTTTGCCGTGGTGCAAGCTTTCTCGCA
TCAATCCCCATTTCCTGTTGAAGAGCTCAGTCTTGATTTTGTAAAGCTTGATGCCGATGAGCAGATGCGTGGAACAGACA
GTTATCAAGTATTCGCGACTCGCAAAGATGTCGTTGAAACTCGTGTCGATGCTCTGCAAAAGTCAGGCTTGAAAACCGTG
CTGGTGGACGTGCATTCACAAAGTTTAGGGCATATATGGAAACTGGCTGTCGAGCGCTTCCCTGAAAAGAGCAAGTATTG
CTTGTTGGATATCAGTGCATTGAGCAGCTCTTTCACCATGTTTACAGAGCAGAGTGAATTGTTCCACAAGGAATTTCCTT
ACGGCACGCGCACTTCAAATGATCTATTTCAACAAGACCCTCTTGCTGAAGACTCGCAAGTTGCTACTGAGCAGTTTAAT
CGACAAATCGTTGATCGTGTAAAGCGCCAGATTCAGCTCTATACCTCGATTAATGGAAATCAAGACATCAAAGGCATTTG
GTTGTCTGGTGAAGGTGCAGCTACGCCAATGTTAGCAGAAGAACTTTCAAGTCAGTTGGCATTGGAGTGTGAGTTGCTTA
ATCCGCTCGGTCTATTCGAGATGAAAGTATCGAAACGCAAACGCCGTGCAGCAGATTGGCAGCATTTTACTGCGGCTGCG
GGCTTAGCGGTTAGAGGTATTCAATGGCTAGGAGGCAAACATGCTGTATCACATTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(8-326)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3A1Q0R6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Vibrio campbellii strain DS40M4

90.533

100

0.905
  pilM Vibrio cholerae strain A1552

48.83

100

0.494