Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   KZR01_RS11635 Genome accession   NZ_CP080098
Coordinates   306674..307306 (+) Length   210 a.a.
NCBI ID   WP_005381432.1    Uniprot ID   U2ZZI4
Organism   Vibrio harveyi strain     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 301674..312306
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KZR01_RS11615 - 303570..304049 (+) 480 WP_045485636.1 TIGR02444 family protein -
  KZR01_RS11620 - 304150..305157 (+) 1008 WP_061065419.1 hydrolase -
  KZR01_RS11625 - 305228..305440 (+) 213 WP_005451451.1 YheU family protein -
  KZR01_RS11630 - 305565..306434 (+) 870 WP_005438358.1 phosphoribulokinase -
  KZR01_RS11635 crp 306674..307306 (+) 633 WP_005381432.1 cAMP-activated global transcriptional regulator CRP Regulator
  KZR01_RS11640 - 307496..308287 (-) 792 WP_061065420.1 DUF1338 domain-containing protein -
  KZR01_RS11645 astD 308552..310009 (-) 1458 WP_017819681.1 succinylglutamate-semialdehyde dehydrogenase -
  KZR01_RS11650 astA 310038..311057 (-) 1020 WP_005438349.1 arginine N-succinyltransferase -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23665.48 Da        Isoelectric Point: 7.8388

>NTDB_id=591068 KZR01_RS11635 WP_005381432.1 306674..307306(+) (crp) [Vibrio harveyi strain]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSAQMARRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=591068 KZR01_RS11635 WP_005381432.1 306674..307306(+) (crp) [Vibrio harveyi strain]
ATGGTTCTAGGTAAACCTCAAACCGACCCAACATTAGAGTGGTTTCTTTCACACTGTCATATTCATAAGTACCCATCAAA
GAGCACGCTAATTCACGCGGGCGAAAAAGCAGAGACTTTGTACTACATCGTTAAAGGTTCTGTTGCGGTTCTTATCAAAG
ACGAAGAAGGTAAGGAAATGATCCTTTCTTACCTAAACCAAGGCGACTTCATTGGTGAGCTTGGTCTATTCGAAGAAGAC
CAAGAGCGTACAGCTTGGGTTCGCGCTAAATCTCCTTGTGAAGTGGCAGAGATTTCTTTCAAGAAATTCCGTCAACTTAT
CCAAGTTAACCCAGACATCCTAATGCGTCTTTCAGCGCAAATGGCTCGTCGTCTACAAGTTACTAGCCAAAAAGTGGGTG
ACCTAGCGTTCCTAGACGTAACTGGTCGTATCGCTCAGACTCTTCTGAACCTTGCTAAACAACCAGATGCGATGACGCAC
CCAGACGGCATGCAAATCAAGATCACTCGTCAGGAAATCGGTCAAATCGTTGGCTGTTCTCGTGAGACAGTAGGTCGTAT
CTTGAAGATGCTAGAAGAGCAGAACCTAATTTCTGCGCACGGTAAGACTATCGTTGTTTACGGGACTCGTTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB U2ZZI4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

98.095

100

0.981
  crp Haemophilus influenzae Rd KW20

75.49

97.143

0.733
  crp Acinetobacter baumannii D1279779

47.826

98.571

0.471