Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   KXE03_RS23640 Genome accession   NZ_CP080007
Coordinates   5144367..5145704 (+) Length   445 a.a.
NCBI ID   WP_034014849.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain S-1     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5139367..5150704
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KXE03_RS23615 (KXE03_23605) pgeF 5139510..5140238 (-) 729 WP_023435616.1 peptidoglycan editing factor PgeF -
  KXE03_RS23620 (KXE03_23610) rluD 5140235..5141197 (-) 963 WP_003094686.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  KXE03_RS23625 (KXE03_23615) - 5141343..5142368 (+) 1026 WP_003102590.1 outer membrane protein assembly factor BamD -
  KXE03_RS23630 (KXE03_23620) - 5142525..5142770 (+) 246 WP_003102591.1 PP0621 family protein -
  KXE03_RS23635 (KXE03_23625) pilS 5142760..5144352 (+) 1593 WP_058166740.1 two-component system sensor histidine kinase PilS Regulator
  KXE03_RS23640 (KXE03_23630) pilR 5144367..5145704 (+) 1338 WP_034014849.1 two-component system response regulator PilR Regulator
  KXE03_RS23645 (KXE03_23635) thiO 5145750..5146844 (-) 1095 WP_074235043.1 glycine oxidase ThiO -
  KXE03_RS23650 (KXE03_23640) - 5146984..5147484 (+) 501 WP_016254062.1 GspH/FimT family pseudopilin -
  KXE03_RS23655 (KXE03_23645) - 5147607..5148095 (+) 489 WP_003141552.1 GspH/FimT family pseudopilin -
  KXE03_RS23660 (KXE03_23650) pilV 5148105..5148629 (+) 525 WP_003116261.1 type IV pilus modification protein PilV Machinery gene
  KXE03_RS23665 (KXE03_23655) - 5148638..5149453 (+) 816 WP_016562347.1 PilW family protein -
  KXE03_RS23670 (KXE03_23660) - 5149450..5150055 (+) 606 WP_003116263.1 PilX N-terminal domain-containing pilus assembly protein -

Sequence

Protein


Download         Length: 445 a.a.        Molecular weight: 49695.02 Da        Isoelectric Point: 5.8638

>NTDB_id=590719 KXE03_RS23640 WP_034014849.1 5144367..5145704(+) (pilR) [Pseudomonas aeruginosa strain S-1]
MSRQKALIVDDEPDIRELLEITLGRMKLDTRSARNVKEARELLAREPFDLCLTDMRLPDGSGLDLVQYIQQRHPQTPVAM
ITAYGSLDTAIQALKAGAFDFLTKPVDLGRLRELVATALRLRNPEAEEAPVDNRLLGESPPMRALRNQIGKLARSQAPVY
ISGESGSGKELVARLIHEQGPRIERPFVPVNCGAIPSELMESEFFGHKKGSFTGAIEDKQGLFQAASGGTLFLDEVADLP
MAMQVKLLRAIQEKAVRAVGGQQEVAVDVRILCATHKDLAAEVGAGRFRQDLYYRLNVIELRVPPLRERREDIPLLADRI
LKRLAGDTGLPAAKLTGDAQEKLKNYRFPGNVRELENMLERAYTLCEDDQIQPHDLRLADAPGASQEGAASLSEIDNLED
YLEDIERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGID

Nucleotide


Download         Length: 1338 bp        

>NTDB_id=590719 KXE03_RS23640 WP_034014849.1 5144367..5145704(+) (pilR) [Pseudomonas aeruginosa strain S-1]
ATGAGCCGACAAAAAGCCCTGATCGTCGACGATGAACCGGATATCCGCGAACTGCTGGAAATCACTCTCGGCCGCATGAA
GCTGGACACCCGCAGCGCCCGCAACGTCAAGGAAGCCCGCGAGTTGCTGGCCCGCGAGCCGTTCGACCTGTGCCTCACCG
ACATGCGCCTGCCGGACGGCAGCGGCCTCGATCTGGTCCAGTACATCCAGCAGCGCCATCCACAGACCCCGGTGGCCATG
ATCACCGCGTACGGCAGCCTGGACACCGCGATCCAGGCGCTCAAGGCCGGTGCCTTCGACTTCCTCACCAAACCGGTCGA
CCTCGGTCGCTTGCGGGAGCTGGTGGCAACCGCCCTGCGCTTGCGCAACCCGGAAGCCGAGGAAGCGCCGGTGGACAACC
GCCTGCTCGGCGAGTCGCCGCCGATGCGCGCCCTGCGCAACCAGATCGGCAAGCTGGCGCGCAGCCAGGCGCCGGTCTAC
ATCAGTGGCGAGTCCGGCAGCGGCAAGGAACTGGTGGCGCGCCTGATCCACGAGCAGGGGCCACGTATCGAGCGGCCGTT
CGTGCCGGTGAACTGCGGCGCGATTCCCTCCGAGCTGATGGAAAGCGAGTTCTTCGGCCACAAGAAAGGCAGCTTCACTG
GCGCTATCGAAGACAAGCAGGGCCTGTTCCAGGCCGCCAGCGGTGGCACCCTGTTCCTCGACGAAGTCGCCGACCTGCCG
ATGGCCATGCAGGTCAAACTGCTCCGGGCGATCCAGGAAAAGGCCGTGCGCGCGGTCGGCGGCCAGCAGGAGGTCGCCGT
CGACGTGCGCATCCTCTGCGCCACCCACAAGGACCTCGCCGCCGAAGTCGGCGCCGGGCGCTTCCGCCAGGACCTCTACT
ACCGCCTCAACGTCATCGAGCTGCGCGTACCGCCGCTGCGCGAACGCCGCGAGGACATCCCGCTGCTCGCCGATCGCATC
CTCAAGCGCCTGGCCGGCGACACCGGCCTGCCGGCCGCCAAGCTGACCGGCGACGCGCAGGAGAAGCTGAAGAACTACCG
CTTCCCGGGCAACGTCCGCGAGCTGGAAAACATGCTGGAGCGCGCCTATACCCTGTGCGAAGACGACCAGATCCAGCCTC
ACGACCTGCGCCTGGCCGATGCGCCGGGTGCCAGCCAGGAAGGCGCGGCGAGCCTGAGCGAAATCGACAACCTCGAGGAC
TACCTGGAAGACATCGAGCGCAAGCTGATCATGCAGGCGCTCGAGGAGACCCGCTGGAACCGCACCGCCGCGGCCCAGCG
CCTGGGCCTGACGTTCCGCTCGATGCGCTATCGCCTGAAAAAGCTGGGCATCGACTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(135-301)

Response regulator receiver domain (Response_reg)

(7-115)

Bacterial regulatory protein, Fis family (HTH_8)

(402-442)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

99.551

100

0.996
  pilR Acinetobacter baumannii strain A118

51.198

100

0.528
  luxO Vibrio cholerae strain A1552

37.946

100

0.382