Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   KXE03_RS23660 Genome accession   NZ_CP080007
Coordinates   5148105..5148629 (+) Length   174 a.a.
NCBI ID   WP_003116261.1    Uniprot ID   Q7WZP2
Organism   Pseudomonas aeruginosa strain S-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5143105..5153629
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KXE03_RS23640 (KXE03_23630) pilR 5144367..5145704 (+) 1338 WP_034014849.1 two-component system response regulator PilR Regulator
  KXE03_RS23645 (KXE03_23635) thiO 5145750..5146844 (-) 1095 WP_074235043.1 glycine oxidase ThiO -
  KXE03_RS23650 (KXE03_23640) - 5146984..5147484 (+) 501 WP_016254062.1 GspH/FimT family pseudopilin -
  KXE03_RS23655 (KXE03_23645) - 5147607..5148095 (+) 489 WP_003141552.1 GspH/FimT family pseudopilin -
  KXE03_RS23660 (KXE03_23650) pilV 5148105..5148629 (+) 525 WP_003116261.1 type IV pilus modification protein PilV Machinery gene
  KXE03_RS23665 (KXE03_23655) - 5148638..5149453 (+) 816 WP_016562347.1 PilW family protein -
  KXE03_RS23670 (KXE03_23660) - 5149450..5150055 (+) 606 WP_003116263.1 PilX N-terminal domain-containing pilus assembly protein -
  KXE03_RS23675 (KXE03_23665) - 5150069..5153545 (+) 3477 WP_023103514.1 pilus assembly protein -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18763.51 Da        Isoelectric Point: 4.9113

>NTDB_id=590720 KXE03_RS23660 WP_003116261.1 5148105..5148629(+) (pilV) [Pseudomonas aeruginosa strain S-1]
MSRETGFSMIEVLVALVLISIGVLGMVAMQGRTIQYTQESVQRNAAAMLASDLMEIMRADPDAVLNLRAQLREDSVYYKA
KGSDFPAAPARCAPLPADAKERLGCWAQQASKDLPGASALLNSQFYICRSPTPGTCDNTKGSAIEIQVAWRAMDGACFNA
SDSTLCTYSVRSEL

Nucleotide


Download         Length: 525 bp        

>NTDB_id=590720 KXE03_RS23660 WP_003116261.1 5148105..5148629(+) (pilV) [Pseudomonas aeruginosa strain S-1]
ATGTCTCGAGAAACGGGTTTCAGCATGATCGAAGTACTGGTTGCTCTGGTGCTGATCAGCATTGGCGTACTGGGCATGGT
TGCCATGCAAGGGCGCACGATCCAGTACACGCAGGAGTCGGTACAACGCAATGCCGCAGCAATGCTTGCTAGCGACCTGA
TGGAAATAATGCGTGCGGACCCAGATGCCGTACTCAATCTACGCGCCCAACTACGCGAAGACTCGGTCTACTACAAGGCC
AAGGGCAGCGACTTTCCCGCAGCCCCAGCGCGCTGCGCGCCATTGCCAGCAGATGCTAAGGAACGTCTCGGCTGCTGGGC
CCAACAGGCCTCGAAAGACTTGCCGGGAGCCTCCGCACTCTTGAATAGCCAATTCTACATTTGTCGCAGCCCAACCCCGG
GTACCTGCGACAACACCAAAGGCTCGGCCATCGAAATCCAGGTTGCCTGGCGAGCCATGGATGGAGCGTGTTTCAACGCC
TCTGACTCCACCTTGTGCACCTACAGCGTCCGCTCCGAATTGTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q7WZP2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

59.429

100

0.598