Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   KZH42_RS00860 Genome accession   NZ_CP079941
Coordinates   157184..157687 (-) Length   167 a.a.
NCBI ID   WP_219297984.1    Uniprot ID   -
Organism   Neisseria meningitidis strain C311     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 152184..162687
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KZH42_RS00845 (KZH42_00845) gnd 152400..153848 (-) 1449 WP_002225759.1 decarboxylating NADP(+)-dependent phosphogluconate dehydrogenase -
  KZH42_RS00850 (KZH42_00850) lpxC 155176..156099 (-) 924 WP_002216134.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  KZH42_RS00855 (KZH42_00855) - 156091..156534 (+) 444 WP_141562916.1 hypothetical protein -
  KZH42_RS00860 (KZH42_00860) pilE 157184..157687 (-) 504 WP_219297984.1 pilin Machinery gene
  KZH42_RS00865 (KZH42_00865) - 158463..158888 (-) 426 Protein_169 pilin -
  KZH42_RS00870 (KZH42_00870) - 159213..159599 (-) 387 Protein_170 pilin -
  KZH42_RS00875 (KZH42_00875) - 159864..160253 (-) 390 Protein_171 pilin -
  KZH42_RS00880 (KZH42_00880) - 160778..161110 (-) 333 Protein_172 pilin -
  KZH42_RS00885 (KZH42_00885) - 161416..161838 (-) 423 Protein_173 pilin -
  KZH42_RS11435 - 162116..162427 (-) 312 Protein_174 pilin -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 17705.06 Da        Isoelectric Point: 7.8433

>NTDB_id=590353 KZH42_RS00860 WP_219297984.1 157184..157687(-) (pilE) [Neisseria meningitidis strain C311]
MNTLQKGFTLIELMIVIAIVGILAAVALPAYQDYTARAQVSEAILLAEGQKSAVTEYYLNHGEWPGNNTSAGVASSSTIK
GKYVKEVTVANGVITATMLSSGVNKEIQGKKLSLWAKRQNGSVKWFCGQPVTRNDTDDTVAAVAADNTGNINTKHLPSTC
RDASDAS

Nucleotide


Download         Length: 504 bp        

>NTDB_id=590353 KZH42_RS00860 WP_219297984.1 157184..157687(-) (pilE) [Neisseria meningitidis strain C311]
ATGAACACCCTTCAAAAAGGTTTTACCCTTATCGAGCTGATGATTGTGATTGCCATCGTCGGCATTTTGGCGGCAGTCGC
CCTTCCTGCTTATCAAGACTACACAGCCCGCGCACAAGTTTCCGAAGCCATTCTTTTGGCCGAAGGTCAAAAATCAGCCG
TCACAGAGTATTACCTGAATCACGGCGAATGGCCCGGCAACAACACTTCTGCCGGCGTGGCATCTTCTTCAACAATCAAA
GGCAAATATGTTAAGGAAGTTACAGTCGCAAACGGCGTCATTACCGCCACAATGCTTTCAAGCGGCGTAAACAAAGAAAT
CCAAGGCAAAAAACTCTCCCTGTGGGCCAAGCGTCAAAACGGTTCGGTCAAATGGTTCTGCGGACAGCCGGTTACGCGCA
ACGACACCGACGACACCGTCGCCGCCGTCGCCGCCGACAACACCGGCAACATCAACACCAAGCACCTGCCGTCAACCTGC
CGCGATGCAAGTGATGCCAGCTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(5-28)

Pilin (bacterial filament) (Pilin)

(36-161)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

85.119

100

0.856
  pilE Neisseria gonorrhoeae strain FA1090

82.738

100

0.832
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

34.896

100

0.401
  comP Acinetobacter baylyi ADP1

38.462

100

0.389
  pilA/pilA1 Eikenella corrodens VA1

36

100

0.377