Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KYT87_RS29020 Genome accession   NZ_CP079940
Coordinates   6407981..6408499 (-) Length   172 a.a.
NCBI ID   WP_219991428.1    Uniprot ID   -
Organism   Achromobacter sp. ES-001     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6402981..6413499
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KYT87_RS29010 (KYT87_29005) - 6404099..6404998 (+) 900 WP_219991426.1 LysR family transcriptional regulator -
  KYT87_RS29015 (KYT87_29010) - 6404999..6407791 (-) 2793 WP_219991427.1 GLUG motif-containing protein -
  KYT87_RS29020 (KYT87_29015) ssb 6407981..6408499 (-) 519 WP_219991428.1 single-stranded DNA-binding protein Machinery gene
  KYT87_RS29025 (KYT87_29020) - 6408900..6410084 (-) 1185 WP_046802915.1 MFS transporter -
  KYT87_RS29030 (KYT87_29025) uvrA 6410281..6413136 (+) 2856 WP_370638738.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18632.66 Da        Isoelectric Point: 5.9702

>NTDB_id=590350 KYT87_RS29020 WP_219991428.1 6407981..6408499(-) (ssb) [Achromobacter sp. ES-001]
MASVNKVILVGNLGRDPEVRYSPEGAAICNMSIATTSTWKDKASGERREETEWHRVVMYNRLAEIAGEYLKKGRSVYIEG
RLKTRKWQDKDTGADRYSTEVVADQMQMLGGREDGGGGGASYGGGGYDDAPSRPQQQRAPAQRPAPQQRPAPAAAPASSG
ANLADMDDDIPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=590350 KYT87_RS29020 WP_219991428.1 6407981..6408499(-) (ssb) [Achromobacter sp. ES-001]
ATGGCATCGGTTAACAAAGTCATTCTCGTGGGCAATCTGGGTCGCGACCCGGAAGTCCGCTATAGCCCGGAAGGGGCTGC
AATCTGCAACATGTCCATCGCCACGACCTCCACCTGGAAGGACAAGGCTTCCGGCGAACGCCGCGAAGAAACCGAATGGC
ACCGCGTCGTCATGTACAACCGCCTGGCTGAAATCGCCGGCGAATACCTGAAGAAAGGCCGCTCGGTCTACATCGAAGGC
CGTCTGAAGACGCGCAAGTGGCAAGACAAGGACACCGGCGCTGACCGTTACAGCACCGAAGTGGTGGCTGACCAGATGCA
AATGTTGGGCGGCCGCGAAGACGGCGGTGGCGGCGGCGCCAGCTACGGTGGTGGCGGCTACGATGACGCCCCGTCGCGTC
CGCAACAGCAACGCGCCCCGGCGCAACGCCCGGCGCCGCAACAGCGCCCGGCCCCCGCAGCGGCCCCGGCCAGCAGCGGT
GCGAACTTGGCGGATATGGACGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

55.191

100

0.587
  ssb Neisseria meningitidis MC58

51.075

100

0.552
  ssb Neisseria gonorrhoeae MS11

51.075

100

0.552
  ssb Glaesserella parasuis strain SC1401

48.387

100

0.523
  ssb Latilactobacillus sakei subsp. sakei 23K

34.637

100

0.36