Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   KYD87_RS15335 Genome accession   NZ_CP079891
Coordinates   3088273..3089793 (+) Length   506 a.a.
NCBI ID   WP_104918332.1    Uniprot ID   -
Organism   Escherichia fergusonii strain 5zf15-2-1     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 3083273..3094793
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KYD87_RS15310 (KYD87_15220) ilvE 3084827..3085756 (-) 930 WP_000208520.1 branched-chain-amino-acid transaminase -
  KYD87_RS15315 (KYD87_15225) ilvM 3085776..3086039 (-) 264 WP_000983255.1 acetolactate synthase 2 small subunit -
  KYD87_RS15320 (KYD87_15230) ilvG 3086036..3087682 (-) 1647 WP_182211065.1 acetolactate synthase 2 catalytic subunit -
  KYD87_RS15325 (KYD87_15235) ilvX 3087685..3087735 (-) 51 WP_001387183.1 peptide IlvX -
  KYD87_RS15330 (KYD87_15240) ilvL 3087822..3087920 (-) 99 WP_001311244.1 ilv operon leader peptide -
  KYD87_RS15335 (KYD87_15245) comM 3088273..3089793 (+) 1521 WP_104918332.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  KYD87_RS15340 (KYD87_15250) maoP 3089818..3090156 (-) 339 WP_000841001.1 macrodomain Ori organization protein MaoP -
  KYD87_RS15345 (KYD87_15255) hdfR 3090275..3091114 (+) 840 WP_000379253.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55245.38 Da        Isoelectric Point: 7.6190

>NTDB_id=590029 KYD87_RS15335 WP_104918332.1 3088273..3089793(+) (comM) [Escherichia fergusonii strain 5zf15-2-1]
MSLSIVHTRAALGVNAPPITVEVHISKGLPGLTMVGLPETTVKEARDRVRSAIINSGYEYPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLTAKKLDEYELVGELALTGALRGVPGAISSATEAIKSGRKIIVAKDNEDEVGLINGEGCLIADHL
QAVCAFLEGKHALERPKPTDAVSRALQHDLSDVVGQEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNE
EALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHNGVLFLDELPEFERRTLDALREPIES
GQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGILSKAVVQG
ENSATVKQRVMAARERQFKRQNKLNAWLDSPEIRQFCKLESEDAQWLEETLLHLGLSIRAWQRLLKVSRTIADIDQSDVI
TRQHLQEAVSYRAIDRLLIHLQKLLT

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=590029 KYD87_RS15335 WP_104918332.1 3088273..3089793(+) (comM) [Escherichia fergusonii strain 5zf15-2-1]
ATGTCACTGTCAATTGTTCATACCCGCGCAGCCCTGGGAGTAAATGCGCCCCCAATCACTGTTGAGGTACATATCAGTAA
AGGTCTACCCGGCTTAACGATGGTGGGCTTACCAGAAACAACGGTAAAAGAAGCTCGCGATCGCGTGCGCAGCGCCATTA
TCAATAGCGGATATGAATATCCGGCGAAAAAAATCACCATCAACCTTGCTCCAGCCGATCTGCCAAAAGAAGGGGGACGA
TATGATTTACCTATCGCCATTGCGTTGCTGGCGGCCTCAGAACAGCTTACAGCCAAAAAGTTAGATGAATATGAATTAGT
TGGAGAACTGGCGCTTACAGGCGCTCTGCGTGGCGTTCCCGGCGCAATCTCCAGTGCAACTGAAGCCATTAAGTCGGGCA
GAAAAATTATCGTCGCGAAAGATAACGAAGATGAAGTGGGGCTAATTAACGGTGAAGGATGCCTGATAGCTGATCATCTG
CAGGCTGTCTGTGCGTTTCTGGAAGGTAAGCACGCTCTCGAACGCCCGAAACCAACTGATGCAGTATCCCGGGCGCTACA
ACATGATCTCAGTGATGTTGTCGGTCAGGAGCAAGGAAAGCGAGGACTGGAAATTACCGCCGCTGGCGGACACAACCTTT
TACTGATTGGACCGCCGGGAACAGGTAAAACAATGCTCGCCAGCCGTATTAATGGCCTGTTGCCAGATTTAAGCAATGAA
GAGGCACTGGAGAGCGCTGCGATATTAAGTCTGGTAAATGCTGAATCAGTACAAAAACAATGGCGGCAGCGCCCGTTCCG
CTCACCGCATCACAGTGCGTCGTTAACTGCGATGGTGGGCGGTGGTGCAATTCCAGGGCCAGGTGAAATTTCGCTGGCGC
ATAACGGCGTGCTTTTTCTTGATGAGCTACCTGAATTTGAACGGCGTACACTGGATGCCTTGCGAGAGCCGATTGAATCC
GGGCAGATCCATCTTTCACGCACGCGAGCAAAAATAACCTATCCAGCCCGTTTCCAGCTTGTCGCGGCGATGAATCCCAG
CCCTACCGGACATTATCAGGGAAACCATAACCGCTGCACACCAGAGCAAACGCTGCGTTATCTCAACCGACTCTCTGGTC
CCTTTCTCGACCGCTTCGATCTCTCACTGGAGATCCCACTACCGCCACCCGGTATTTTGAGTAAAGCGGTTGTTCAGGGG
GAAAACAGCGCCACCGTTAAACAACGCGTAATGGCCGCCAGAGAGCGCCAATTTAAGCGGCAGAATAAACTGAATGCCTG
GCTGGATAGTCCGGAAATACGCCAATTCTGCAAGCTTGAGAGCGAAGACGCCCAGTGGCTGGAAGAAACGCTGCTTCATC
TTGGGTTATCGATTCGTGCCTGGCAACGATTACTGAAGGTATCGAGAACTATTGCTGATATTGATCAGTCTGACGTCATC
ACACGCCAGCATTTACAGGAGGCAGTTAGCTATCGAGCTATCGATCGCTTACTTATTCATTTACAAAAACTACTGACATA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.708

100

0.593
  comM Glaesserella parasuis strain SC1401

58.777

100

0.589
  comM Vibrio cholerae strain A1552

58.765

99.209

0.583
  comM Vibrio campbellii strain DS40M4

57.968

99.209

0.575
  comM Legionella pneumophila str. Paris

48.394

98.419

0.476
  comM Legionella pneumophila strain ERS1305867

48.394

98.419

0.476
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.269

100

0.443