Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   KYC43_RS22720 Genome accession   NZ_CP079884
Coordinates   4658386..4659906 (+) Length   506 a.a.
NCBI ID   WP_182211063.1    Uniprot ID   -
Organism   Escherichia fergusonii strain 6S41-1     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4653386..4664906
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KYC43_RS22695 (KYC43_22595) ilvE 4654940..4655869 (-) 930 WP_000208520.1 branched-chain-amino-acid transaminase -
  KYC43_RS22700 (KYC43_22600) ilvM 4655889..4656152 (-) 264 WP_000983255.1 acetolactate synthase 2 small subunit -
  KYC43_RS22705 (KYC43_22605) ilvG 4656149..4657795 (-) 1647 WP_182211065.1 acetolactate synthase 2 catalytic subunit -
  KYC43_RS22710 (KYC43_22610) ilvX 4657798..4657848 (-) 51 WP_001387183.1 peptide IlvX -
  KYC43_RS22715 (KYC43_22615) ilvL 4657935..4658033 (-) 99 WP_001311244.1 ilv operon leader peptide -
  KYC43_RS22720 (KYC43_22620) comM 4658386..4659906 (+) 1521 WP_182211063.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  KYC43_RS22725 (KYC43_22625) maoP 4659931..4660269 (-) 339 WP_000841001.1 macrodomain Ori organization protein MaoP -
  KYC43_RS22730 (KYC43_22630) hdfR 4660388..4661227 (+) 840 WP_000379253.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55231.31 Da        Isoelectric Point: 7.3875

>NTDB_id=590015 KYC43_RS22720 WP_182211063.1 4658386..4659906(+) (comM) [Escherichia fergusonii strain 6S41-1]
MSLSIVHTRAALGVNAPPITVEVHISKGLPGLTMVGLPETTVKEARDRVRSAIINSGYEYPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLTAKKLDEYELVGELALTGALRGVPGAISSATEAIKSGRKIIVAKDNEDEVGLINGEGCLIADHL
QAVCAFLEGKHALERPKPTDAVSRALQHDLSDVVGQEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNE
EALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHNGVLFLDELPEFERRTLDALREPIES
GQIHLSRTRANITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGILSKAVVQG
ENSATVKQRVMAARERQFKRQNKLNAWLDSPEIRQFCKLESEDAQWLEETLLHLGLSIRAWQRLLKVSRTIADIDQSDVI
TRQHLQEAVSYRAIDRLLIHLQKLLT

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=590015 KYC43_RS22720 WP_182211063.1 4658386..4659906(+) (comM) [Escherichia fergusonii strain 6S41-1]
ATGTCACTGTCAATTGTTCATACCCGCGCAGCCCTGGGAGTAAATGCGCCCCCAATCACTGTTGAGGTACATATCAGTAA
AGGTCTACCCGGCTTAACGATGGTGGGCTTACCAGAAACAACGGTAAAAGAAGCTCGCGATCGCGTGCGCAGCGCCATTA
TCAATAGCGGATATGAATATCCGGCGAAAAAAATCACCATCAACCTTGCTCCAGCCGATCTGCCAAAAGAAGGGGGACGA
TATGATTTACCTATCGCCATTGCGTTGCTGGCGGCCTCAGAACAGCTTACAGCCAAAAAGTTAGATGAATATGAATTAGT
CGGAGAACTGGCGCTTACAGGCGCTCTGCGTGGCGTTCCCGGCGCAATCTCCAGTGCAACTGAAGCCATTAAGTCGGGCA
GAAAAATTATCGTCGCGAAAGATAACGAAGATGAAGTGGGGCTAATTAACGGTGAAGGATGCCTGATAGCCGATCATCTG
CAGGCTGTCTGTGCGTTTCTGGAAGGTAAGCACGCTCTCGAACGCCCGAAACCAACTGATGCAGTATCCCGGGCGCTACA
ACATGATCTCAGTGATGTTGTCGGTCAGGAGCAAGGAAAGCGAGGACTGGAAATTACCGCCGCTGGCGGACACAACCTTT
TACTGATTGGACCGCCGGGAACAGGTAAAACAATGCTCGCCAGTCGTATTAATGGCCTGTTGCCAGATTTAAGCAATGAA
GAGGCACTGGAGAGCGCTGCGATATTAAGTCTGGTAAATGCTGAATCAGTACAAAAACAATGGCGGCAGCGCCCGTTCCG
CTCACCGCATCACAGTGCGTCGTTAACTGCGATGGTGGGCGGTGGTGCAATTCCAGGGCCTGGTGAAATTTCGCTGGCGC
ATAACGGCGTGCTTTTTCTTGATGAACTACCTGAATTTGAACGACGTACACTGGATGCCTTGCGAGAGCCGATTGAATCC
GGGCAGATCCATCTTTCACGCACGCGAGCAAATATAACCTACCCGGCCCGTTTCCAGCTTGTTGCGGCGATGAACCCCAG
CCCTACTGGACATTATCAGGGAAACCATAACCGCTGCACACCAGAGCAAACGCTGCGTTATCTCAACCGACTCTCTGGTC
CCTTTCTTGACCGATTCGACCTCTCACTGGAGATCCCACTACCGCCACCCGGTATTTTGAGTAAAGCGGTTGTTCAGGGG
GAAAACAGCGCCACCGTTAAACAACGCGTAATGGCCGCCAGAGAGCGCCAATTTAAGCGGCAGAATAAACTGAATGCCTG
GCTGGATAGTCCGGAAATACGCCAATTCTGCAAGCTTGAGAGCGAAGACGCCCAGTGGCTGGAAGAAACGCTGCTTCATT
TGGGGTTATCGATTCGTGCCTGGCAACGATTACTGAAGGTATCGAGAACTATTGCTGATATTGATCAGTCTGACGTCATC
ACACGCCAGCATTTACAGGAGGCAGTTAGCTATCGAGCTATCGATCGCTTGCTTATTCATTTACAAAAACTACTGACATA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.513

100

0.591
  comM Glaesserella parasuis strain SC1401

58.58

100

0.587
  comM Vibrio cholerae strain A1552

58.566

99.209

0.581
  comM Vibrio campbellii strain DS40M4

57.769

99.209

0.573
  comM Legionella pneumophila str. Paris

48.394

98.419

0.476
  comM Legionella pneumophila strain ERS1305867

48.394

98.419

0.476
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.269

100

0.443