Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   KW556_RS22450 Genome accession   NZ_CP079823
Coordinates   4781265..4782779 (+) Length   504 a.a.
NCBI ID   WP_259584394.1    Uniprot ID   -
Organism   Aeromonas veronii strain HD6454     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4776265..4787779
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KW556_RS22435 (KW556_22350) - 4778002..4778946 (-) 945 WP_259584392.1 branched-chain amino acid transaminase -
  KW556_RS22440 (KW556_22355) ilvM 4778959..4779237 (-) 279 WP_005342011.1 acetolactate synthase 2 small subunit -
  KW556_RS22445 (KW556_22360) ilvG 4779234..4780880 (-) 1647 WP_259584393.1 acetolactate synthase 2 catalytic subunit -
  KW556_RS22450 (KW556_22365) comM 4781265..4782779 (+) 1515 WP_259584394.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  KW556_RS22455 (KW556_22370) - 4782906..4783805 (+) 900 WP_259584395.1 acyltransferase -
  KW556_RS22460 (KW556_22375) - 4783812..4784777 (+) 966 WP_259584396.1 acyltransferase -
  KW556_RS22465 (KW556_22380) - 4784702..4785208 (-) 507 WP_259584397.1 DUF523 domain-containing protein -
  KW556_RS22470 (KW556_22385) - 4785205..4785855 (-) 651 WP_005339607.1 DNA mismatch repair protein MutT -
  KW556_RS22475 (KW556_22390) - 4785930..4786565 (+) 636 WP_005357452.1 nicotinamidase -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54600.45 Da        Isoelectric Point: 7.4493

>NTDB_id=589807 KW556_RS22450 WP_259584394.1 4781265..4782779(+) (comM) [Aeromonas veronii strain HD6454]
MSLAVVYSRASLGIAAPQVTVEVHLSNGLPAFNMVGLPETSVKESRDRVRSALLNGNFEFPSKHITVNLAPADLPKEGGR
FDLAIAIGILAASKQIPAKYLLDHEFLGELALTGEIRPVLGVLPAVLACRDAGRTLLVPRENGPEASLIQDAEVRTAHQL
LAVTAWLAGQYELPLPDPQNAESLPDVPDLQDVIGQSQAKRALEIAAAGSHNLLFIGPPGTGKSMLASRLPGILPPLSEQ
EAQQTAAIHSIGGLTPRAGHWHHRPYRTPHHSASAVALVGGGSHPRPGEISLAHNGVLFLDELPEFERKVLDSLREPLET
GHITISRAARQVDFPARFQLVGAMNPSPCGHYGDGQTRSSPDQILRYLGKLSGPFLDRFDLTVEVPLLPKGSLTSKAERG
ESSQQIRDRVLAARERMLSRNGKLNNLLDSREIEDICRLSAQDAEFLENAIQKLGLSIRAWHRILRVSRTIADLAGQSAI
GKEHLIEALGYRAMDRLLSRLRSS

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=589807 KW556_RS22450 WP_259584394.1 4781265..4782779(+) (comM) [Aeromonas veronii strain HD6454]
ATGTCATTAGCTGTGGTTTATAGCCGTGCCAGCCTCGGGATCGCGGCCCCGCAAGTTACAGTGGAAGTTCACCTCTCCAA
CGGCCTGCCCGCCTTCAACATGGTCGGCCTGCCGGAAACCTCGGTGAAAGAGTCGCGGGATCGGGTGCGCAGCGCCCTGC
TCAACGGCAATTTCGAGTTCCCGAGCAAACACATCACCGTCAATCTGGCCCCCGCCGATCTCCCCAAGGAGGGGGGCCGT
TTCGATCTGGCCATCGCCATCGGCATTCTCGCAGCTTCTAAACAAATACCCGCAAAATACCTGCTTGATCACGAATTTTT
AGGGGAGTTGGCCCTGACCGGCGAGATCCGCCCTGTGCTCGGGGTGCTGCCCGCCGTGCTCGCCTGCCGGGATGCGGGGC
GCACCCTGCTGGTACCGCGGGAGAACGGCCCCGAAGCTTCCCTCATTCAGGATGCAGAGGTGCGCACCGCCCACCAGTTG
CTGGCCGTCACAGCTTGGCTGGCGGGCCAGTACGAACTGCCGCTGCCGGATCCCCAAAACGCGGAGAGCCTGCCCGATGT
ACCGGATCTGCAGGATGTGATCGGCCAGTCACAGGCCAAAAGGGCGCTGGAGATCGCCGCCGCCGGCAGCCACAACCTGC
TGTTCATCGGCCCGCCCGGCACAGGCAAGAGCATGTTGGCGAGCCGATTGCCCGGCATTCTGCCGCCGCTCAGCGAGCAA
GAGGCGCAGCAGACCGCCGCCATCCACTCCATCGGTGGCCTCACCCCGCGCGCCGGTCACTGGCACCACAGGCCATACCG
CACGCCGCACCACAGTGCCTCGGCAGTGGCGCTGGTGGGAGGCGGCAGCCACCCAAGGCCCGGCGAAATATCGTTGGCCC
ACAACGGGGTGCTGTTTTTGGATGAATTGCCCGAGTTCGAGCGCAAGGTGCTCGACTCCCTGCGCGAGCCGCTGGAGACG
GGCCACATCACCATCAGTCGGGCCGCCCGTCAGGTGGATTTTCCCGCCCGCTTTCAGCTGGTGGGGGCCATGAATCCCAG
CCCCTGTGGCCACTATGGCGACGGCCAGACCCGCTCCAGCCCGGATCAGATCCTGCGCTACCTCGGCAAACTCTCCGGCC
CCTTTCTCGACCGCTTTGACCTGACGGTGGAGGTGCCACTGCTGCCCAAGGGGAGCCTGACCAGCAAGGCAGAGCGAGGG
GAGTCTAGCCAGCAGATCCGCGATCGAGTGCTGGCGGCACGGGAGCGCATGCTGAGCCGTAACGGCAAGCTCAATAACCT
GCTTGATAGCCGCGAGATAGAGGATATTTGCCGCTTATCGGCGCAAGATGCCGAGTTTTTGGAGAATGCCATCCAGAAGC
TTGGGCTCAGTATCCGGGCCTGGCACCGCATTTTGCGGGTGTCACGCACCATCGCCGATCTGGCGGGGCAATCCGCCATC
GGCAAGGAGCATCTCATCGAGGCGCTCGGTTACAGGGCCATGGACCGGCTGCTGTCGCGACTGCGCAGCAGTTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-390)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

63.147

99.603

0.629
  comM Haemophilus influenzae Rd KW20

61.66

100

0.619
  comM Vibrio campbellii strain DS40M4

61.952

99.603

0.617
  comM Glaesserella parasuis strain SC1401

61.144

100

0.615
  comM Legionella pneumophila str. Paris

50.992

100

0.51
  comM Legionella pneumophila strain ERS1305867

50.992

100

0.51
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.245

100

0.464