Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   LPB404_RS04165 Genome accession   NZ_CP079821
Coordinates   813537..814487 (+) Length   316 a.a.
NCBI ID   WP_023026611.1    Uniprot ID   -
Organism   Streptococcus rubneri strain LPB0404     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 808537..819487
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPB404_RS04145 (LPB404_04145) - 809226..810389 (+) 1164 WP_219075107.1 MFS transporter -
  LPB404_RS04150 (LPB404_04150) - 810470..811759 (+) 1290 WP_219075108.1 D-alanyl-D-alanine carboxypeptidase family protein -
  LPB404_RS04155 (LPB404_04155) - 812116..812667 (+) 552 WP_195214078.1 hypothetical protein -
  LPB404_RS04160 (LPB404_04160) - 812828..813382 (+) 555 WP_195348170.1 hypothetical protein -
  LPB404_RS04165 (LPB404_04165) coiA 813537..814487 (+) 951 WP_023026611.1 competence protein CoiA Machinery gene
  LPB404_RS04170 (LPB404_04170) pepF 814558..816360 (+) 1803 WP_219075109.1 oligoendopeptidase F Regulator
  LPB404_RS04175 (LPB404_04175) - 816362..817075 (+) 714 WP_123159348.1 O-methyltransferase -
  LPB404_RS04180 (LPB404_04180) - 817153..818094 (+) 942 WP_123159347.1 peptidylprolyl isomerase -
  LPB404_RS04185 (LPB404_04185) - 818248..818868 (+) 621 WP_219075110.1 LURP-one-related/scramblase family protein -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 37824.58 Da        Isoelectric Point: 9.3290

>NTDB_id=589758 LPB404_RS04165 WP_023026611.1 813537..814487(+) (coiA) [Streptococcus rubneri strain LPB0404]
MFIATDAKQQRWNCLEKIPMKKEGPFFCLLCGKEVRLKKGVVMRPHFAHVSLEACPFHHETESPEHLELKLGLYQWAKQN
SDAEVESPLQAFQQIADVLLPDQKIALEVQCSSLSMERLKERSDAYRKHGYQVYWLLGKNLWLKKSLSALQEGFVYFSQN
RGFHLWELDLEKQEVRLHYLIHQDLRGRLYYRTQHFPFYGGNLLEVLRTPYAQQNLQQMTVPLDRQFKDYLRQQLYYRHS
KWMALQEQLYLKGKHLLELDLEAFYPLCRPLKSSHFIQIRGDWRSYYQDFMTYYRSTGMKATQTLYSPRFYQNGKA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=589758 LPB404_RS04165 WP_023026611.1 813537..814487(+) (coiA) [Streptococcus rubneri strain LPB0404]
ATGTTTATTGCGACAGATGCAAAGCAACAGCGTTGGAATTGTTTGGAGAAGATCCCGATGAAAAAGGAAGGTCCTTTTTT
CTGTCTCTTGTGTGGAAAGGAAGTCCGCTTAAAGAAAGGGGTCGTGATGCGTCCTCATTTTGCTCACGTTAGCCTAGAGG
CTTGCCCCTTTCATCATGAGACGGAAAGTCCCGAACATCTAGAGTTAAAGCTGGGGCTTTATCAATGGGCCAAGCAAAAC
TCAGATGCTGAAGTAGAAAGTCCTCTGCAGGCTTTCCAACAGATTGCGGATGTTCTCCTTCCGGATCAAAAGATTGCCTT
AGAAGTGCAATGTAGTTCCTTGTCTATGGAGCGTTTGAAAGAACGGAGCGATGCCTATCGCAAGCATGGTTATCAGGTCT
ATTGGTTGTTAGGGAAAAACTTGTGGCTTAAGAAAAGCTTGTCTGCTCTGCAAGAAGGTTTTGTCTATTTTAGTCAAAAT
AGGGGCTTTCATCTCTGGGAGTTGGACCTAGAGAAGCAGGAAGTTCGGCTCCACTATCTGATCCATCAAGACTTGCGAGG
GCGTCTTTATTATCGGACTCAACATTTTCCTTTTTATGGAGGGAATCTGTTAGAAGTTTTGCGGACGCCTTATGCCCAAC
AAAACTTGCAACAAATGACAGTCCCTCTAGACAGACAGTTTAAGGACTATCTTCGTCAACAGCTGTACTACCGGCATTCT
AAATGGATGGCTCTTCAGGAACAACTCTATCTGAAAGGAAAGCATCTCCTGGAATTGGACTTGGAAGCTTTTTATCCCCT
TTGTCGGCCGCTGAAGTCTTCCCATTTTATCCAGATTAGGGGAGATTGGCGAAGCTATTACCAGGACTTTATGACCTACT
ATCGTTCAACTGGAATGAAAGCGACGCAGACTCTTTATTCACCTCGTTTTTATCAGAATGGGAAAGCTTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(21-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

49.359

98.734

0.487
  coiA Streptococcus pneumoniae TIGR4

48.718

98.734

0.481
  coiA Streptococcus pneumoniae Rx1

48.397

98.734

0.478
  coiA Streptococcus pneumoniae D39

48.397

98.734

0.478
  coiA Streptococcus pneumoniae R6

48.397

98.734

0.478
  coiA Lactococcus lactis subsp. cremoris KW2

40.498

100

0.411