Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   LPB404_RS04170 Genome accession   NZ_CP079821
Coordinates   814558..816360 (+) Length   600 a.a.
NCBI ID   WP_219075109.1    Uniprot ID   -
Organism   Streptococcus rubneri strain LPB0404     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 809558..821360
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPB404_RS04150 (LPB404_04150) - 810470..811759 (+) 1290 WP_219075108.1 D-alanyl-D-alanine carboxypeptidase family protein -
  LPB404_RS04155 (LPB404_04155) - 812116..812667 (+) 552 WP_195214078.1 hypothetical protein -
  LPB404_RS04160 (LPB404_04160) - 812828..813382 (+) 555 WP_195348170.1 hypothetical protein -
  LPB404_RS04165 (LPB404_04165) coiA 813537..814487 (+) 951 WP_023026611.1 competence protein CoiA Machinery gene
  LPB404_RS04170 (LPB404_04170) pepF 814558..816360 (+) 1803 WP_219075109.1 oligoendopeptidase F Regulator
  LPB404_RS04175 (LPB404_04175) - 816362..817075 (+) 714 WP_123159348.1 O-methyltransferase -
  LPB404_RS04180 (LPB404_04180) - 817153..818094 (+) 942 WP_123159347.1 peptidylprolyl isomerase -
  LPB404_RS04185 (LPB404_04185) - 818248..818868 (+) 621 WP_219075110.1 LURP-one-related/scramblase family protein -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69184.34 Da        Isoelectric Point: 4.6181

>NTDB_id=589759 LPB404_RS04170 WP_219075109.1 814558..816360(+) (pepF) [Streptococcus rubneri strain LPB0404]
MVKQRNEIDEKYQWDLSTIFATDQAWEEEATALAAAIKDAARFAGSLLSSPANLLETTEVYLDLSRRLEKVYVYAHMKND
QDTRVAKYQEFQSKAMSLYSLLGETFAFYEPEFMEITEEQYANFLKEVPALEAYAHYFDKLLKTKEHVLSQKEEELLAGA
GEIFAAAGETFEILDNADIVFPMVKDDQGQKVQLTHGNYISLVESKDRQVRKEAYQALYGVYEQYQHTYAKTLQTNVKVH
NYNAKVRKFSSAREAALSANFIPESVYDSLVEAVNKHLPLLQRYVKLRSKILGIEDLKMYDVYTPLSSTDYKFTYEEALA
KSEQALAVLGEDYLSRVKRAFTERWIDVHVNQGKRSGAYSGGSYDTNAFMLLNWQDTLDNLFTLVHETGHSMHSSYTRET
QPYVYGDYSIFLAEIASTTNENILTEQLLAEVEDDETRFAILNHFLDGFRGTVFRQTQFAEFEHAIHKADQEGQVLTSEF
LNELYADLNEKYYGLSKEDNPEIQYEWARIPHFYYNYYVFQYSTGFAAASALAEKIVHGTQEDKDKYLEYLKAGNSDYPL
NVIRKAGVDMEKEDYLNAAFEVFERRLNEFEALVEKLGLA

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=589759 LPB404_RS04170 WP_219075109.1 814558..816360(+) (pepF) [Streptococcus rubneri strain LPB0404]
ATGGTAAAACAACGAAATGAAATTGATGAAAAATACCAATGGGATTTGTCAACCATTTTTGCGACAGACCAAGCTTGGGA
AGAAGAAGCAACTGCTTTAGCTGCAGCGATTAAAGATGCTGCCCGTTTTGCAGGCTCTTTATTGTCTTCTCCAGCCAACC
TATTAGAAACAACAGAAGTTTATTTGGACTTGAGCCGTCGTTTGGAGAAGGTCTATGTCTACGCCCATATGAAGAATGAT
CAGGATACGCGCGTAGCCAAATACCAAGAATTCCAATCAAAAGCCATGTCCCTTTACAGCCTTTTAGGGGAGACTTTTGC
CTTCTACGAACCAGAATTTATGGAGATCACCGAAGAGCAATATGCCAACTTCTTGAAAGAAGTCCCTGCCTTAGAAGCTT
ATGCTCATTACTTTGACAAATTGCTCAAAACCAAAGAGCACGTTCTTTCTCAAAAAGAAGAAGAATTGCTAGCAGGAGCG
GGTGAAATCTTTGCTGCTGCGGGTGAAACCTTTGAGATTCTGGACAATGCCGATATCGTCTTCCCAATGGTGAAAGATGA
CCAAGGGCAAAAAGTGCAGTTGACTCATGGAAACTATATTTCTTTGGTAGAGTCGAAGGATCGCCAAGTCCGTAAGGAAG
CTTACCAAGCCTTGTATGGTGTCTACGAACAGTACCAACATACTTATGCCAAGACCCTTCAGACCAACGTCAAGGTCCAC
AATTACAATGCTAAGGTTCGCAAATTCTCTAGCGCGCGTGAAGCAGCTCTTTCTGCTAACTTTATCCCAGAGAGCGTCTA
TGATAGCTTGGTAGAAGCGGTGAACAAACATTTGCCACTCTTGCAACGCTACGTGAAACTCCGCTCAAAAATCTTGGGAA
TTGAAGATTTGAAGATGTATGATGTCTACACGCCATTATCTTCTACCGATTACAAGTTCACCTATGAAGAAGCCCTTGCC
AAGTCTGAGCAGGCTTTGGCGGTGCTTGGTGAGGACTACCTATCACGCGTGAAGCGGGCCTTCACTGAACGTTGGATCGA
CGTCCATGTCAACCAAGGAAAACGCTCAGGAGCTTATTCAGGTGGATCGTACGACACCAATGCCTTTATGTTGTTGAACT
GGCAAGATACATTGGACAATCTCTTCACCTTGGTGCATGAGACTGGCCACAGTATGCACTCCAGCTATACCCGTGAAACC
CAACCTTATGTCTATGGGGACTATTCTATCTTCCTTGCTGAGATTGCATCTACAACCAATGAAAATATCTTGACCGAGCA
ACTGTTGGCAGAAGTAGAAGATGATGAAACGCGTTTTGCCATTCTCAACCATTTCTTGGATGGCTTCCGTGGTACAGTCT
TCCGTCAAACCCAGTTTGCGGAGTTTGAACATGCGATTCACAAGGCTGACCAAGAAGGACAAGTCTTGACCAGCGAATTC
TTGAATGAGTTGTATGCAGACTTGAACGAGAAATACTATGGTCTTTCAAAAGAAGACAACCCAGAAATCCAATACGAATG
GGCTCGTATTCCTCATTTCTACTATAACTACTATGTCTTCCAATATTCAACTGGTTTTGCAGCAGCCTCTGCCTTGGCTG
AGAAAATTGTACATGGAACACAGGAAGATAAGGACAAATACCTAGAGTATTTGAAGGCTGGAAATTCGGATTATCCACTC
AACGTGATCCGCAAGGCGGGTGTCGATATGGAAAAAGAAGACTACCTCAATGCAGCCTTTGAAGTCTTTGAACGTCGCCT
CAATGAATTTGAGGCCCTGGTTGAAAAATTAGGATTGGCCTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-581)

Oligopeptidase F (Peptidase_M3_N)

(112-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

69.631

99.333

0.692