Detailed information    

insolico Bioinformatically predicted

Overview

Name   stkP   Type   Regulator
Locus tag   LPB404_RS03175 Genome accession   NZ_CP079821
Coordinates   632300..634168 (+) Length   622 a.a.
NCBI ID   WP_219075017.1    Uniprot ID   -
Organism   Streptococcus rubneri strain LPB0404     
Function   require for competence development; phosphorylate ComE (predicted from homology)   
Competence regulation

Genomic Context

Location: 627300..639168
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPB404_RS03160 (LPB404_03160) fmt 629303..630238 (+) 936 WP_219075015.1 methionyl-tRNA formyltransferase -
  LPB404_RS03165 (LPB404_03165) rsmB 630228..631541 (+) 1314 WP_219075016.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  LPB404_RS03170 (LPB404_03170) - 631563..632303 (+) 741 WP_023022352.1 Stp1/IreP family PP2C-type Ser/Thr phosphatase -
  LPB404_RS03175 (LPB404_03175) stkP 632300..634168 (+) 1869 WP_219075017.1 Stk1 family PASTA domain-containing Ser/Thr kinase Regulator
  LPB404_RS03180 (LPB404_03180) liaF 634302..634997 (+) 696 WP_219075018.1 cell wall-active antibiotics response protein LiaF -
  LPB404_RS03185 (LPB404_03185) - 634994..636013 (+) 1020 WP_219075019.1 sensor histidine kinase -
  LPB404_RS03190 (LPB404_03190) - 635991..636623 (+) 633 WP_023022361.1 response regulator transcription factor -
  LPB404_RS03195 (LPB404_03195) - 636668..638074 (+) 1407 WP_219075020.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -
  LPB404_RS03200 (LPB404_03200) - 638071..638439 (+) 369 WP_120701187.1 S1 RNA-binding domain-containing protein -

Sequence

Protein


Download         Length: 622 a.a.        Molecular weight: 68454.59 Da        Isoelectric Point: 5.4876

>NTDB_id=589749 LPB404_RS03175 WP_219075017.1 632300..634168(+) (stkP) [Streptococcus rubneri strain LPB0404]
MIQIGKIFAGRYKIIRQIGRGGMADVYLARDLILDGEEVAVKVLRTNYQTDPIAVARFQREAKAMADLDHPNIVRITDIG
EEEGQQYLAMEYVAGLDLKRYIKENAPLSNEEAVRLMGQILLAMRLAHTQGIIHRDLKPQNVLLTPDGNAKVSDFGIAVA
FAETSLTQTNSMLGSVHYLSPEQARGSKASVQSDIYAMGIIFYEMLTGHIPYDGDSAVTIALQHFQKPLPSIIEENKNVP
QALENVVIKATAKKLSDRYKSVAEMYVDLSSCLSYERRNEKKLVFDDASKADTKTLPKVNVVPKPAPLPTSDVRPAVHED
LPGTSEDRTVPVSPKNKPRRRLRTRYKVLFVALALVLAAFAFLLYMSPANKTVPDVSGKTVAEARAIIEDQDLQVGDEKE
EYSDSVLEGYVIRTNPNAGAQKKENSKIDLVVSKGPSTFDMRDYTNMAREDAENDLKNNYKLSSKLISIEEVETNEVEPG
IVIEQSPAAGQKYDLTSSTKVVLKVSKESNSIELPSYVGSYYEFAVSNLVQIYGVKEANIERKTTSHLPAGVEVLPGQIV
SQTPEAQSSIDIKKTRIVLTVYEPKTEPSSSTKASSSSSDSSSSTTVESHSNTDPSATTEPE

Nucleotide


Download         Length: 1869 bp        

>NTDB_id=589749 LPB404_RS03175 WP_219075017.1 632300..634168(+) (stkP) [Streptococcus rubneri strain LPB0404]
ATGATTCAAATCGGCAAAATTTTTGCCGGACGATATAAGATAATCCGCCAAATCGGGCGTGGAGGGATGGCAGATGTCTA
TCTCGCTCGGGATTTAATCTTAGATGGTGAAGAAGTTGCAGTTAAAGTACTGAGGACCAATTACCAAACAGATCCAATTG
CAGTTGCTCGCTTCCAACGAGAGGCTAAAGCGATGGCAGATTTGGATCATCCAAATATCGTTCGGATCACGGATATCGGT
GAAGAGGAAGGCCAACAATACTTGGCGATGGAATATGTCGCTGGCTTAGACTTGAAACGTTATATCAAGGAAAATGCTCC
TCTTTCAAATGAAGAAGCCGTTCGCTTGATGGGGCAAATCCTTCTTGCTATGCGCTTGGCGCACACGCAAGGGATTATTC
ACCGTGACTTAAAGCCTCAAAACGTTCTTTTAACACCAGATGGAAATGCCAAGGTCTCTGACTTTGGGATTGCAGTAGCC
TTTGCAGAAACGAGTCTCACTCAGACAAACTCTATGTTGGGATCGGTTCATTATTTGTCCCCTGAACAAGCCAGAGGATC
GAAAGCTTCTGTTCAAAGTGACATTTATGCAATGGGAATTATTTTCTATGAAATGCTGACGGGACATATCCCTTATGATG
GGGATAGTGCAGTGACCATCGCACTACAACATTTCCAAAAACCACTTCCATCCATCATCGAAGAAAATAAAAATGTTCCA
CAAGCCTTGGAAAATGTGGTTATTAAGGCAACGGCAAAGAAACTATCCGATCGCTATAAGTCGGTAGCTGAAATGTATGT
CGACCTATCTAGCTGCTTATCTTATGAACGGCGTAACGAGAAGAAATTGGTCTTTGATGACGCTTCAAAAGCGGATACCA
AGACCCTACCAAAGGTAAACGTGGTTCCAAAACCAGCTCCACTTCCAACATCAGACGTTCGTCCGGCCGTTCATGAGGAC
CTACCAGGGACTTCAGAGGATAGAACAGTTCCAGTTTCTCCAAAAAATAAGCCACGTCGTCGTTTGAGGACACGCTATAA
AGTCTTGTTTGTTGCTTTAGCTTTGGTACTAGCTGCCTTTGCCTTTCTTCTTTATATGAGTCCAGCCAACAAAACAGTTC
CGGATGTATCTGGAAAAACTGTCGCAGAAGCTCGGGCTATCATTGAAGATCAGGATCTTCAAGTTGGAGACGAAAAAGAA
GAATACAGTGATTCTGTACTTGAGGGCTATGTGATTCGTACCAATCCAAATGCTGGAGCTCAGAAAAAGGAAAACAGCAA
GATTGATTTGGTTGTTTCGAAAGGACCAAGCACCTTTGACATGAGAGACTATACTAATATGGCTAGAGAAGATGCAGAAA
ATGACCTGAAAAATAACTATAAGCTGTCTAGCAAGCTCATTTCGATTGAAGAAGTTGAGACCAATGAAGTAGAGCCAGGA
ATCGTTATTGAGCAATCTCCTGCCGCTGGTCAAAAATATGATTTGACTTCTAGTACGAAGGTTGTTCTGAAAGTATCTAA
GGAAAGTAATTCCATCGAATTACCAAGTTATGTCGGTTCTTATTATGAATTTGCTGTTTCTAATCTCGTTCAGATCTACG
GGGTGAAGGAAGCAAATATTGAACGGAAGACCACATCGCATCTTCCGGCTGGAGTAGAAGTCTTACCAGGTCAAATTGTG
AGTCAGACTCCAGAAGCTCAATCAAGCATCGATATTAAAAAGACTCGTATTGTCTTGACTGTGTACGAACCGAAGACGGA
ACCATCAAGTAGTACGAAAGCTTCAAGCAGTTCATCAGACAGCTCAAGCTCTACAACAGTGGAATCACATTCCAATACGG
ATCCTTCAGCTACCACTGAGCCAGAATAG

Domains

Predicted by InterproScan.

PASTA domain (PASTA)

(513-582)

PASTA domain (PASTA)

(372-434)

PASTA domain (PASTA)

(441-507)

Protein kinase domain (Pkinase)

(12-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  stkP Streptococcus pneumoniae TIGR4

63.203

94.373

0.596
  stkP Streptococcus pneumoniae D39

63.032

94.373

0.595
  stkP Streptococcus pneumoniae R6

63.032

94.373

0.595
  stkP Streptococcus pneumoniae Rx1

62.862

94.373

0.593
  pknB Streptococcus mutans UA159

58.118

87.138

0.506
  stkP/pknB Streptococcus salivarius strain HSISS4

52.872

95.177

0.503