Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   LPB402_RS08355 Genome accession   NZ_CP079820
Coordinates   1740966..1743098 (+) Length   710 a.a.
NCBI ID   WP_219088963.1    Uniprot ID   -
Organism   Neisseria sicca ATCC 29256     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1735966..1748098
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPB402_RS08335 (LPB402_08340) pilM 1737997..1739088 (+) 1092 WP_039862505.1 type IV pilus assembly protein PilM -
  LPB402_RS08340 (LPB402_08345) pilN 1739093..1739716 (+) 624 WP_070460446.1 PilN domain-containing protein Machinery gene
  LPB402_RS08345 (LPB402_08350) - 1739716..1740387 (+) 672 WP_070460443.1 type 4a pilus biogenesis protein PilO -
  LPB402_RS08350 (LPB402_08355) pilP 1740403..1740945 (+) 543 WP_070460442.1 pilus assembly protein PilP Machinery gene
  LPB402_RS08355 (LPB402_08360) pilQ 1740966..1743098 (+) 2133 WP_219088963.1 type IV pilus secretin PilQ Machinery gene
  LPB402_RS08360 (LPB402_08365) - 1743231..1743743 (+) 513 WP_283122435.1 shikimate kinase -
  LPB402_RS08365 (LPB402_08370) aroB 1743766..1744845 (+) 1080 WP_219088959.1 3-dehydroquinate synthase -
  LPB402_RS08370 (LPB402_08375) - 1744976..1746289 (-) 1314 WP_219088957.1 sensor histidine kinase -
  LPB402_RS08375 (LPB402_08380) - 1746319..1746996 (-) 678 WP_070460434.1 response regulator -
  LPB402_RS08380 (LPB402_08385) - 1747142..1747708 (-) 567 WP_049328898.1 NADPH-dependent FMN reductase -

Sequence

Protein


Download         Length: 710 a.a.        Molecular weight: 78066.19 Da        Isoelectric Point: 9.6083

>NTDB_id=589705 LPB402_RS08355 WP_219088963.1 1740966..1743098(+) (pilQ) [Neisseria sicca ATCC 29256]
MKTKHMTKLFAGFSVALAVQTAFAGNITDINVSTLPDNQKIIKIRFDKDVTTPHGFVTSTPARIALDFANTNIRLPEPVL
EYADPLLNQITAAQNNDRARVVLGLNKISQYNTEIRGNEVWVFVNESTDQTNAAVANERAATPSTARAAQTYQAVSAANI
DFRKGVRNSGIIELSAPGFSGQPDIKQQRDRVVVTLKNHTLPTQAQRSLDVADFNTPVQNVTLKRIGNSTQLIIRNNNAN
WDINTKASSGRFVFEVSPKAANTESGGLNQNTNKSFKGRKISLDFQDVEVRTILQILAKESGVNIVASDTVKGTMTLSLK
DVPWDQALDLVMQARNLDMRRQGNIINIAPRDELLAKDKAFLQAEKEIAELGPLYSQTFQLKYKNVEEFRKILRLEEYDS
NNSNTRNTLLSNRGSALIDPATNTLIVTDNRGVIEKFRKLIDELDVPTRQVMVEARIVEAEDTFFRNLGVKFGSGGASGR
NAWGSNWSNAQTNYNTNASFNRGDVGYRTWTLDPNVSLPTAAAVNSIALVRAFSSGALGLEISASEEQGKSKTISNPRVL
TQDRKEAKIESGTEIPYQEASSSGATSITFKKAVLGLTVTPNITPDGQIIMTVKINRDTPIDCTVDSLTTKCINTKHLNT
QAMVEDGGTLIVGGIYEEESTNAVNKVPVLGDIPVVGNLFKSRGKRENRRELLIFITPRIMDNVGNNLRY

Nucleotide


Download         Length: 2133 bp        

>NTDB_id=589705 LPB402_RS08355 WP_219088963.1 1740966..1743098(+) (pilQ) [Neisseria sicca ATCC 29256]
ATGAAAACCAAGCACATGACAAAATTATTTGCCGGCTTCAGCGTTGCCCTCGCTGTTCAGACGGCCTTTGCAGGCAATAT
TACCGATATCAACGTTTCCACTTTGCCTGACAACCAAAAAATCATCAAAATCCGTTTCGACAAAGACGTCACCACACCTC
ATGGTTTTGTAACATCTACTCCGGCGCGTATTGCATTGGATTTTGCCAACACCAATATCCGTTTGCCAGAGCCTGTTTTG
GAATATGCCGACCCATTGCTGAATCAAATTACTGCGGCGCAAAACAATGACCGAGCACGCGTGGTTTTGGGTTTAAACAA
AATCAGCCAATACAATACTGAGATTCGCGGCAACGAAGTTTGGGTATTTGTAAACGAATCTACTGATCAAACCAATGCTG
CTGTTGCAAATGAACGTGCGGCTACGCCGTCTACCGCGCGCGCTGCTCAGACTTATCAAGCTGTTTCAGCAGCCAATATC
GATTTCCGCAAAGGCGTACGTAATTCCGGCATTATTGAATTGTCCGCCCCAGGTTTCAGCGGGCAGCCGGACATTAAACA
GCAGCGCGACCGCGTGGTTGTGACCTTGAAAAACCATACGCTGCCGACACAAGCGCAACGCAGTTTGGATGTGGCTGACT
TCAATACCCCTGTACAAAACGTTACGCTCAAACGTATTGGCAATTCTACCCAGCTCATTATCCGCAACAATAATGCGAAT
TGGGACATCAATACCAAAGCTTCTTCCGGCCGTTTTGTATTTGAAGTATCACCTAAAGCCGCCAATACCGAATCCGGCGG
CTTAAACCAAAATACAAACAAATCGTTCAAAGGCCGTAAAATTTCTTTGGATTTCCAAGATGTAGAAGTTCGTACCATCT
TGCAGATTTTGGCAAAAGAATCCGGCGTGAATATTGTTGCCAGCGATACCGTCAAAGGCACCATGACCCTGTCCCTGAAA
GATGTACCTTGGGATCAGGCTTTAGACTTGGTTATGCAGGCGCGTAATTTGGATATGCGCCGTCAAGGCAACATCATTAA
TATTGCGCCTCGCGATGAATTGTTGGCAAAAGATAAAGCCTTCTTACAGGCTGAAAAAGAGATTGCCGAATTGGGTCCGC
TGTATTCTCAAACCTTCCAGTTGAAATACAAAAACGTGGAAGAATTCCGCAAAATTCTGCGTCTGGAAGAATACGACAGC
AATAACTCCAATACCCGCAACACTCTGTTGAGCAACCGAGGCAGCGCCTTAATTGATCCGGCCACCAATACGCTGATCGT
GACCGACAACCGTGGCGTGATTGAGAAATTCCGCAAACTGATTGATGAATTGGACGTTCCAACCCGTCAAGTGATGGTGG
AAGCGCGTATTGTGGAAGCAGAAGATACCTTCTTCCGCAACTTGGGCGTTAAATTCGGTTCCGGTGGTGCAAGTGGCCGT
AACGCATGGGGCAGCAACTGGAGCAATGCACAAACCAACTACAATACCAATGCCTCATTTAACCGTGGCGACGTAGGCTA
CCGCACATGGACTTTAGATCCGAATGTCAGTCTGCCGACCGCAGCCGCAGTCAACAGCATTGCGCTGGTGCGTGCGTTCT
CGTCCGGCGCATTGGGTTTGGAAATCAGCGCGTCTGAAGAACAAGGTAAGAGCAAGACCATTTCCAATCCGCGCGTGCTG
ACACAAGACCGCAAAGAAGCCAAAATCGAATCCGGTACGGAAATTCCTTACCAAGAGGCTTCTTCCAGCGGTGCAACTTC
GATTACCTTCAAGAAAGCTGTTTTGGGTTTGACCGTAACGCCGAACATTACGCCTGACGGTCAAATCATCATGACTGTGA
AGATTAATCGCGATACCCCGATCGACTGTACCGTGGATTCTCTGACAACCAAGTGTATCAACACCAAACACTTGAATACC
CAAGCCATGGTTGAAGATGGCGGCACGCTGATTGTCGGCGGTATTTACGAAGAAGAAAGCACCAATGCAGTGAACAAAGT
ACCTGTTTTGGGCGATATTCCTGTTGTCGGCAATCTGTTCAAATCACGCGGCAAACGTGAAAACCGCCGTGAGCTGTTGA
TCTTCATCACGCCGCGCATTATGGATAATGTGGGTAACAATCTGCGTTACTGA

Domains

Predicted by InterproScan.

AMIN domain (AMIN)

(38-115)

Bacterial type II/III secretion system short domain (Secretin_N)

(377-450)

Bacterial type II and III secretion system protein (Secretin)

(545-702)

Secretin and TonB N terminus short domain (STN)

(303-350)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Neisseria meningitidis M1080

61.161

100

0.668
  pilQ Neisseria meningitidis MC58

60.536

100

0.668
  pilQ Neisseria gonorrhoeae strain FA1090

64.043

100

0.665