Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   LPB402_RS08340 Genome accession   NZ_CP079820
Coordinates   1739093..1739716 (+) Length   207 a.a.
NCBI ID   WP_070460446.1    Uniprot ID   -
Organism   Neisseria sicca ATCC 29256     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1734093..1744716
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPB402_RS08325 (LPB402_08330) - 1734559..1735395 (-) 837 WP_070460450.1 PHP domain-containing protein -
  LPB402_RS08330 (LPB402_08335) - 1735456..1737843 (-) 2388 WP_070460449.1 penicillin-binding protein 1A -
  LPB402_RS08335 (LPB402_08340) pilM 1737997..1739088 (+) 1092 WP_039862505.1 type IV pilus assembly protein PilM -
  LPB402_RS08340 (LPB402_08345) pilN 1739093..1739716 (+) 624 WP_070460446.1 PilN domain-containing protein Machinery gene
  LPB402_RS08345 (LPB402_08350) - 1739716..1740387 (+) 672 WP_070460443.1 type 4a pilus biogenesis protein PilO -
  LPB402_RS08350 (LPB402_08355) pilP 1740403..1740945 (+) 543 WP_070460442.1 pilus assembly protein PilP Machinery gene
  LPB402_RS08355 (LPB402_08360) pilQ 1740966..1743098 (+) 2133 WP_219088963.1 type IV pilus secretin PilQ Machinery gene
  LPB402_RS08360 (LPB402_08365) - 1743231..1743743 (+) 513 WP_283122435.1 shikimate kinase -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 23074.30 Da        Isoelectric Point: 4.7171

>NTDB_id=589703 LPB402_RS08340 WP_070460446.1 1739093..1739716(+) (pilN) [Neisseria sicca ATCC 29256]
MIELTRINLLPYREEIKQRKQQQFKILMLGAFAVGLGLAAATYLGIDSAISNQEGRNNFLQTEIDRLDRELGEIDKLQQE
KEAFLAKKLKVEELQEKRYQAAYILDSLNTLTPDNTYLTALEAESPTSYKISGHAISDNKIAVMMRSLPSTGIFLQPELL
SIKKVDNYQEFTLKSSINQVNTPAPAPTAQSSGEMAEPVAEPAPEAQ

Nucleotide


Download         Length: 624 bp        

>NTDB_id=589703 LPB402_RS08340 WP_070460446.1 1739093..1739716(+) (pilN) [Neisseria sicca ATCC 29256]
ATGATCGAATTAACCAGAATCAACCTTCTCCCATATCGGGAAGAGATTAAACAGCGCAAGCAGCAGCAATTCAAAATATT
GATGCTTGGCGCTTTTGCAGTAGGTTTGGGCTTGGCGGCCGCTACCTATCTTGGTATTGACAGCGCCATCAGCAATCAAG
AAGGCCGCAACAACTTCCTGCAAACCGAAATCGACAGACTTGATAGAGAATTGGGCGAAATCGATAAACTTCAGCAAGAA
AAAGAAGCCTTCTTGGCCAAAAAACTGAAAGTTGAAGAGTTACAGGAAAAACGCTATCAAGCGGCCTATATCCTTGATTC
TTTGAATACACTTACGCCCGATAATACTTATTTGACCGCGTTGGAAGCCGAAAGTCCGACCAGCTATAAAATCAGCGGTC
ATGCCATCAGCGACAATAAAATTGCCGTTATGATGCGCTCCTTGCCAAGTACAGGTATTTTCTTGCAGCCTGAATTGTTG
AGCATTAAAAAAGTAGATAACTACCAAGAATTTACTTTGAAATCTTCAATCAACCAAGTGAATACGCCGGCTCCTGCACC
AACTGCCCAAAGTAGCGGTGAAATGGCCGAACCTGTGGCAGAACCTGCTCCGGAGGCTCAATAA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(104-176)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Neisseria meningitidis strain C311

56.345

95.169

0.536