Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   LPB402_RS08350 Genome accession   NZ_CP079820
Coordinates   1740403..1740945 (+) Length   180 a.a.
NCBI ID   WP_070460442.1    Uniprot ID   -
Organism   Neisseria sicca ATCC 29256     
Function   pseudopilus extrusion and retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1735403..1745945
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPB402_RS08330 (LPB402_08335) - 1735456..1737843 (-) 2388 WP_070460449.1 penicillin-binding protein 1A -
  LPB402_RS08335 (LPB402_08340) pilM 1737997..1739088 (+) 1092 WP_039862505.1 type IV pilus assembly protein PilM -
  LPB402_RS08340 (LPB402_08345) pilN 1739093..1739716 (+) 624 WP_070460446.1 PilN domain-containing protein Machinery gene
  LPB402_RS08345 (LPB402_08350) - 1739716..1740387 (+) 672 WP_070460443.1 type 4a pilus biogenesis protein PilO -
  LPB402_RS08350 (LPB402_08355) pilP 1740403..1740945 (+) 543 WP_070460442.1 pilus assembly protein PilP Machinery gene
  LPB402_RS08355 (LPB402_08360) pilQ 1740966..1743098 (+) 2133 WP_219088963.1 type IV pilus secretin PilQ Machinery gene
  LPB402_RS08360 (LPB402_08365) - 1743231..1743743 (+) 513 WP_283122435.1 shikimate kinase -
  LPB402_RS08365 (LPB402_08370) aroB 1743766..1744845 (+) 1080 WP_219088959.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 20033.58 Da        Isoelectric Point: 5.9502

>NTDB_id=589704 LPB402_RS08350 WP_070460442.1 1740403..1740945(+) (pilP) [Neisseria sicca ATCC 29256]
MKKIILLLSLLPLAACTQSYEDLTQWMTQTRQEAKSKIIPFEEPTVTLPKPYSPPNFKGMNAFDSRRLDTAPKGGNAPDV
NRPKETLEAFSLENMAFVGTLQSGGKVSGFIKVKDHVYTVYPGNYIGQNYGRIQSITEDKIILTEQVEDSYGNWVYRKAE
LPLSSKEADSSNSSDSSNSN

Nucleotide


Download         Length: 543 bp        

>NTDB_id=589704 LPB402_RS08350 WP_070460442.1 1740403..1740945(+) (pilP) [Neisseria sicca ATCC 29256]
ATGAAAAAAATCATCTTACTCTTAAGTCTTCTTCCCTTGGCAGCCTGTACGCAAAGCTATGAAGATTTGACTCAATGGAT
GACGCAAACCCGTCAGGAAGCAAAATCCAAGATTATTCCGTTTGAAGAGCCGACGGTTACATTGCCTAAGCCGTATAGCC
CGCCGAACTTTAAAGGTATGAATGCGTTTGATTCACGCCGTTTGGACACTGCCCCTAAAGGCGGTAATGCGCCGGATGTG
AACCGTCCGAAAGAAACATTGGAAGCCTTCAGTTTGGAAAATATGGCCTTTGTCGGAACGCTGCAAAGCGGCGGCAAAGT
TTCCGGATTTATCAAGGTCAAGGACCATGTTTATACCGTTTATCCCGGAAACTACATCGGTCAGAATTACGGCAGAATCC
AAAGTATTACCGAAGATAAAATTATCTTAACCGAGCAAGTTGAAGACAGCTACGGCAACTGGGTGTACCGAAAGGCCGAA
TTGCCATTGAGCAGTAAAGAGGCAGATTCTTCCAATAGTTCAGATAGTTCGAATTCAAATTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(22-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Neisseria meningitidis MC58

60.588

94.444

0.572