Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   HV822_RS10035 Genome accession   NZ_CP079801
Coordinates   2181044..2182558 (-) Length   504 a.a.
NCBI ID   WP_238869853.1    Uniprot ID   -
Organism   Halopseudomonas maritima strain RR6     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2176044..2187558
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HV822_RS10020 (HV822_10000) - 2176378..2176800 (+) 423 WP_238869850.1 cytochrome c5 family protein -
  HV822_RS10025 (HV822_10005) rep 2176854..2178863 (-) 2010 WP_238869851.1 DNA helicase Rep -
  HV822_RS10030 (HV822_10010) - 2179198..2180871 (+) 1674 WP_238869852.1 bifunctional diguanylate cyclase/phosphodiesterase -
  HV822_RS10035 (HV822_10015) comM 2181044..2182558 (-) 1515 WP_238869853.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  HV822_RS10040 (HV822_10020) - 2182606..2182851 (-) 246 WP_238869854.1 accessory factor UbiK family protein -
  HV822_RS10045 (HV822_10025) - 2183154..2183351 (+) 198 WP_238869855.1 hypothetical protein -
  HV822_RS10050 (HV822_10030) glnK 2183407..2183745 (+) 339 WP_083725581.1 P-II family nitrogen regulator -
  HV822_RS10055 (HV822_10035) - 2183798..2185048 (+) 1251 WP_238869856.1 ammonium transporter -
  HV822_RS10060 (HV822_10040) - 2185120..2186463 (-) 1344 WP_238869857.1 ATP-binding protein -
  HV822_RS10065 (HV822_10045) - 2186441..2187106 (-) 666 WP_238869858.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 53782.91 Da        Isoelectric Point: 8.1563

>NTDB_id=589564 HV822_RS10035 WP_238869853.1 2181044..2182558(-) (comM) [Halopseudomonas maritima strain RR6]
MSLAIVHSRARLGIDAPAVSVEVHLANGMPSLTLVGLPETAVRESKDRVRSALQNAQLEFPGSRRITISLAPADLPKEGG
RFDLAIALGLLAASGQIPVAALEGCECIGELALSGELRPVQGVLPVALACRNAGRRLILPRANAAEAALVDGVELIAAEH
LLALCAHLRGEEALAPLPAVTPASPPPVAELADVQGQEQAKRALIVAAAGGHNVLLFGPPGTGKTLLASRLPGILPPLQE
HEALEVAAIQSVCERSPLLAWPGRPFRAPHHGASAAALVGGGSQPRPGEISQAHNGVLFLDELPEFDRKVLEMLREPLES
GSIHIARAREQLRFPARFQLVAAMNPCPCGYQGDPSARCRCTPEQIQRYRSKLSGPLLDRIDLHLAMRNEPFKLTGQTER
GKPDTATAAAQVAAARLRQQQRQQCLNAHLDLSALQQQCALSDADGAWLEQAVERLGLSRRASHRVLKVARTLADLAGVS
RIERAHLAEALQYRQLDRQPQRSA

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=589564 HV822_RS10035 WP_238869853.1 2181044..2182558(-) (comM) [Halopseudomonas maritima strain RR6]
ATGTCCCTGGCTATCGTCCATAGTCGTGCCCGCCTGGGTATCGACGCCCCCGCCGTCAGCGTTGAAGTCCATCTGGCCAA
CGGCATGCCCAGCCTGACCCTGGTCGGGCTGCCTGAAACCGCCGTGCGCGAAAGCAAGGACCGTGTCCGCAGCGCCCTGC
AGAACGCCCAGCTGGAGTTTCCCGGCAGTCGTCGCATTACCATTAGCCTGGCCCCCGCCGACCTGCCCAAAGAAGGCGGC
CGCTTTGACCTGGCCATTGCCCTCGGGCTGCTGGCGGCCAGCGGACAGATTCCCGTCGCTGCGCTGGAGGGGTGTGAGTG
CATTGGCGAACTGGCGCTATCGGGTGAGCTGCGCCCCGTGCAGGGTGTACTGCCGGTGGCGCTAGCCTGCCGCAACGCTG
GACGCCGACTGATTTTGCCCCGGGCCAATGCAGCAGAAGCCGCGCTGGTCGACGGCGTGGAGCTGATCGCCGCCGAACAC
CTGCTGGCGCTATGCGCCCACCTGCGCGGCGAGGAGGCACTAGCGCCGCTGCCCGCAGTAACACCAGCGTCACCTCCGCC
AGTGGCCGAGCTGGCCGACGTGCAGGGTCAGGAGCAAGCCAAACGCGCACTGATCGTTGCCGCTGCTGGCGGCCACAATG
TGCTGCTTTTCGGGCCGCCCGGCACCGGCAAAACCCTGCTGGCCAGCCGCCTGCCGGGCATTCTGCCGCCACTGCAGGAG
CACGAAGCACTGGAAGTCGCGGCGATTCAATCGGTCTGCGAGCGCAGTCCGTTGCTGGCCTGGCCGGGACGGCCGTTTCG
CGCGCCCCACCACGGTGCATCCGCTGCCGCGCTGGTTGGCGGCGGCAGCCAGCCCCGTCCGGGCGAGATCAGCCAGGCGC
ACAACGGCGTGCTGTTTCTGGACGAGTTGCCGGAGTTTGATCGCAAGGTGCTGGAGATGCTGCGCGAGCCACTGGAGTCC
GGCAGTATCCACATCGCCCGCGCCCGCGAGCAGCTGCGCTTTCCGGCGCGCTTTCAGCTGGTGGCGGCGATGAACCCCTG
CCCCTGCGGCTATCAGGGTGATCCGTCGGCGCGTTGCCGTTGCACCCCGGAGCAGATTCAACGCTATCGCAGCAAGCTGT
CCGGCCCCTTGCTCGATCGCATTGACCTGCACCTGGCGATGCGCAACGAGCCCTTCAAACTGACCGGACAGACCGAGCGG
GGTAAACCAGACACCGCCACCGCCGCCGCTCAGGTAGCCGCCGCGAGGCTACGGCAGCAACAGCGCCAGCAGTGCCTGAA
CGCCCATCTGGATCTGTCCGCCCTGCAGCAGCAATGCGCACTGAGCGATGCAGACGGTGCCTGGCTGGAGCAGGCGGTCG
AGCGCCTGGGACTATCGCGGCGCGCCAGCCACCGCGTGCTCAAGGTGGCCCGCACCCTGGCTGACCTGGCAGGCGTATCG
CGCATCGAACGCGCGCACCTGGCCGAGGCACTGCAGTACCGGCAGTTGGACCGTCAGCCGCAGAGGTCGGCCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(404-494)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-390)

Subunit ChlI of Mg-chelatase (ChlI)

(21-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

55.556

100

0.556
  comM Vibrio cholerae strain A1552

55.666

99.802

0.556
  comM Glaesserella parasuis strain SC1401

52.652

100

0.532
  comM Haemophilus influenzae Rd KW20

52.25

100

0.53
  comM Legionella pneumophila str. Paris

49.902

100

0.504
  comM Legionella pneumophila strain ERS1305867

49.902

100

0.504
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.01

100

0.456