Detailed information NTG0589562

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: HV822_RS09675
• Genome accession: NZ_CP079801
• Coordinates: 2104264..2105418 (+)
• Length: 384 a.a.
• NCBI ID: WP_238869791.1
• Uniprot ID: -
• Organism: Halopseudomonas maritima strain RR6
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2099264..2110418

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HV822_RS09650 (HV822_09635)	-	2099647..2100789 (-)	1143	WP_238869786.1	homoserine O-acetyltransferase	-
HV822_RS09655 (HV822_09640)	-	2100961..2101551 (-)	591	WP_238869787.1	YggT family protein	-
HV822_RS09660 (HV822_09645)	proC	2101561..2102379 (-)	819	WP_238869788.1	pyrroline-5-carboxylate reductase	-
HV822_RS09665 (HV822_09650)	-	2102403..2103089 (-)	687	WP_238869789.1	YggS family pyridoxal phosphate-dependent enzyme	-
HV822_RS09670 (HV822_09655)	pilT	2103168..2104202 (+)	1035	WP_238869790.1	type IV pilus twitching motility protein PilT	Machinery gene
HV822_RS09675 (HV822_09660)	pilU	2104264..2105418 (+)	1155	WP_238869791.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
HV822_RS09680 (HV822_09665)	siaD	2105585..2106376 (-)	792	WP_238869792.1	biofilm regulation diguanylate cyclase SiaD	-
HV822_RS09685 (HV822_09670)	siaC	2106384..2106761 (-)	378	WP_238869793.1	biofilm regulation phosphoprotein SiaC	-
HV822_RS09690 (HV822_09675)	siaB	2106783..2107325 (-)	543	WP_238869794.1	biofilm regulation protein kinase SiaB	-
HV822_RS09695 (HV822_09680)	siaA	2107345..2109336 (-)	1992	WP_238869795.1	biofilm regulation protein phosphatase SiaA	-

Sequence

Protein

• Length: 384 a.a.
• Molecular weight: 42987.45 Da
• Isoelectric Point: 6.7410

>NTDB_id=589562 HV822_RS09675 WP_238869791.1 2104264..2105418(+) (pilU) [Halopseudomonas maritima strain RR6]
MEFEKLLRLMVEKGASDLFITAGVPPSMKVHGKILPVTKTPLSPEQTRETVLGVMTEAQRREFAENRECNFAISARGIGR
FRVSAFYQRNLVGMVLRRIEINIPTMEELRLPDILKQLAMTKRGLVIFVGATGTGKSTSLASMIGYRNKHSSGHIISIED
PIEFIHQHQNCIVTQREVGIDTDSFEVALKNTLRQAPDVILIGEVRTKETMDHAVAFAETGHLCLATLHANNANQALDRI
IHFFPNEMHQQVWMDLSLNLKAIVAQQLIPTPDGKGRRAAIEVMLNTPLAADMIRKGEVHELKPLMARSNEVGMQTFDQA
LYKLYSAGEITYEDALAHADSANDLRLMIKLGSETDGKHLMQNQQEGGFSLEEDEDVGLRNHRR

Nucleotide

• Length: 1155 bp

>NTDB_id=589562 HV822_RS09675 WP_238869791.1 2104264..2105418(+) (pilU) [Halopseudomonas maritima strain RR6]
ATGGAGTTTGAAAAGCTGTTGCGGTTGATGGTCGAGAAAGGCGCCTCCGACTTGTTCATCACCGCCGGTGTGCCACCGAG
TATGAAGGTTCACGGCAAGATCCTGCCGGTTACCAAAACGCCCCTTTCACCGGAACAGACCCGCGAGACCGTCCTCGGGG
TGATGACCGAGGCCCAGCGCCGCGAGTTTGCCGAAAACCGCGAGTGCAACTTTGCGATCAGTGCGCGCGGCATTGGCCGC
TTCCGGGTCAGTGCCTTCTACCAGCGCAACCTGGTGGGCATGGTGCTGCGGCGGATCGAGATCAACATTCCGACCATGGA
AGAGCTGCGCCTGCCCGACATTCTCAAGCAACTGGCGATGACCAAACGCGGGCTGGTGATCTTTGTCGGGGCCACCGGTA
CGGGTAAGTCGACCTCGCTGGCCTCAATGATCGGTTACCGTAACAAGCACTCCAGCGGCCATATCATCTCCATTGAAGAC
CCGATCGAATTTATTCACCAGCACCAGAACTGCATCGTCACACAGCGTGAGGTCGGCATTGATACCGACTCGTTCGAGGT
GGCGCTGAAGAACACCCTGCGCCAGGCGCCGGATGTGATCTTGATTGGTGAGGTGCGTACCAAGGAGACCATGGACCACG
CCGTGGCCTTCGCCGAGACCGGCCACCTGTGTCTGGCCACCCTGCACGCCAACAACGCCAACCAGGCGCTGGACCGTATC
ATCCACTTCTTCCCCAACGAGATGCATCAGCAGGTCTGGATGGATCTGTCGTTGAACCTCAAGGCCATTGTGGCGCAACA
GTTGATTCCGACGCCGGATGGCAAGGGACGTCGTGCGGCGATCGAGGTGATGCTCAACACCCCGCTGGCGGCAGATATGA
TCCGCAAGGGCGAGGTGCACGAGCTCAAGCCGTTGATGGCGCGCTCCAACGAAGTGGGCATGCAGACCTTTGACCAGGCG
CTCTACAAGCTCTACAGCGCCGGCGAGATCACCTACGAAGACGCCCTGGCCCACGCCGACTCGGCCAACGACCTGCGCCT
GATGATCAAGCTGGGCTCGGAAACCGACGGCAAGCACCTGATGCAGAACCAGCAGGAAGGCGGCTTCTCGCTGGAAGAGG
ACGAAGACGTGGGGCTGCGCAACCACCGTCGATAG

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (108-270)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Pseudomonas stutzeri DSM 10701	84.334	99.74	0.841
pilU	Acinetobacter baylyi ADP1	66.106	92.969	0.615
pilU	Vibrio cholerae strain A1552	58.516	94.792	0.555
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	44.248	88.281	0.391