Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   EGT72_RS01035 Genome accession   NZ_CP079792
Coordinates   213466..214953 (-) Length   495 a.a.
NCBI ID   WP_125280627.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain AJ_082     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 208466..219953
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGT72_RS01010 (EGT72_001010) - 208552..208956 (+) 405 WP_125280630.1 MAPEG family protein -
  EGT72_RS01015 (EGT72_001015) ppa 209074..209601 (+) 528 WP_058868713.1 inorganic diphosphatase -
  EGT72_RS01020 (EGT72_001020) - 209704..211029 (-) 1326 WP_010325681.1 OprD family outer membrane porin -
  EGT72_RS01025 (EGT72_001025) - 211489..212259 (+) 771 WP_125280629.1 TorF family putative porin -
  EGT72_RS01030 (EGT72_001030) - 212607..213356 (+) 750 WP_125280628.1 TorF family putative porin -
  EGT72_RS01035 (EGT72_001035) comM 213466..214953 (-) 1488 WP_125280627.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  EGT72_RS01040 (EGT72_001040) - 215019..215246 (-) 228 WP_004692854.1 accessory factor UbiK family protein -
  EGT72_RS01045 (EGT72_001045) glnK 215521..215859 (+) 339 WP_004281042.1 P-II family nitrogen regulator -
  EGT72_RS01050 (EGT72_001050) - 215919..217322 (+) 1404 WP_010325684.1 ammonium transporter -
  EGT72_RS01055 (EGT72_001055) nrdR 217474..217932 (+) 459 WP_004692852.1 transcriptional regulator NrdR -
  EGT72_RS01060 (EGT72_001060) ribD 217947..219050 (+) 1104 WP_125280626.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54356.19 Da        Isoelectric Point: 7.8055

>NTDB_id=589500 EGT72_RS01035 WP_125280627.1 213466..214953(-) (comM) [Acinetobacter johnsonii strain AJ_082]
MSFAKIYTRALLGLHAPSVEVEVHLSQGLPSLTIVGLPEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDSSR
LDLPIALGILIASGQLPEQGTENFEFIGELALDGQLRPISGTLSIAIACQQAGHQLILPEANAQEASQLPNFQVFAAQHL
KQVCEHLSQNHLIQQFQPTALKASQHYKFDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLASILPPLNT
QENLEVASIYSVANHQHPFGQRPFRAPHHTASAVALVGGGSQPKPGEITLAHKGVLFLDELPEFDRKVLEVLRQPIEAKE
IVISRASRQITFPANFQLIAAMNPCPCGYAFNQDSRCQCSAEAIKRYQNRISGPLLDRIDLHIDVPPLHASELQDTQAVE
DSATVRERVIQAYEWQMQRQACLNMALSPKQLEQFAPLDGQAALIFEKAQQRLNLSARGYHRILRVARTIADLAQSEQIQ
TGHLTEALSYRGQHH

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=589500 EGT72_RS01035 WP_125280627.1 213466..214953(-) (comM) [Acinetobacter johnsonii strain AJ_082]
ATGTCTTTTGCCAAAATTTACACTCGAGCTTTGCTCGGTTTACACGCACCTTCGGTTGAAGTTGAAGTTCATCTGAGCCA
AGGACTACCCTCTTTAACCATTGTGGGGCTTCCTGAAGCTGCCGTTCGGGAAAGCAAAGATCGGGTGCGCTCCGCCATTA
TCAATAGTGGCTTTCAGTTTCCGACCAAACGCCTCACCATCAACCTTGCGCCCGCAGATCTGCCCAAAGACAGCTCACGA
CTGGATTTGCCTATTGCACTGGGTATTTTAATTGCCTCTGGTCAGCTCCCCGAACAAGGAACTGAAAATTTTGAATTTAT
AGGTGAGTTGGCACTTGATGGGCAACTGCGACCAATTTCAGGTACTTTAAGTATTGCAATTGCCTGCCAGCAAGCTGGGC
ATCAACTGATTTTACCGGAGGCCAATGCGCAAGAAGCCTCTCAACTGCCCAACTTTCAAGTGTTTGCAGCGCAACATTTA
AAACAAGTCTGTGAGCATCTGTCGCAAAACCATCTCATCCAACAGTTTCAACCCACGGCGCTAAAAGCCTCACAGCACTA
CAAGTTTGATTTGGCCGATGTTAAAGGTCAACTGCGTCCGAGACGTGCCTTAGAGATTGCGGCAGCAGGTGGTCATTCTT
TACTGTTTAAAGGACCGCCAGGGACAGGGAAAACCCTATTGGCTTCACGTTTAGCCAGTATTCTACCGCCCTTGAATACG
CAAGAGAATTTGGAAGTGGCGAGTATTTACTCGGTGGCCAATCATCAACATCCTTTTGGACAGCGGCCATTTCGTGCACC
GCACCATACAGCTTCTGCAGTTGCCCTAGTCGGTGGCGGGTCACAACCCAAACCCGGTGAAATTACTTTGGCACATAAAG
GCGTGCTGTTTTTAGATGAGCTACCAGAGTTTGACCGCAAGGTGTTGGAGGTTTTAAGACAGCCGATTGAAGCCAAAGAG
ATTGTGATTTCGCGTGCTTCACGGCAGATCACCTTTCCAGCCAATTTCCAACTGATTGCCGCAATGAACCCGTGTCCCTG
TGGTTATGCTTTTAATCAAGATAGCCGTTGTCAGTGCTCAGCCGAGGCGATTAAACGCTACCAAAACCGCATTTCAGGGC
CGTTACTGGATCGGATTGATTTACATATTGATGTACCACCCTTGCATGCTTCTGAATTGCAGGACACACAAGCCGTGGAA
GACTCGGCAACTGTACGTGAACGCGTGATTCAAGCTTATGAATGGCAAATGCAACGCCAAGCTTGTCTCAATATGGCTTT
ATCACCCAAACAACTCGAACAATTCGCACCACTCGATGGACAAGCGGCTTTAATCTTTGAAAAAGCACAGCAGCGTTTAA
ATTTGTCTGCTCGGGGTTATCATCGGATTTTAAGAGTGGCCAGAACCATTGCCGACTTAGCGCAGTCTGAACAGATTCAA
ACAGGCCACTTAACCGAAGCCCTGTCTTATCGTGGGCAACATCACTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

51.904

100

0.523
  comM Vibrio cholerae strain A1552

51.308

100

0.515
  comM Glaesserella parasuis strain SC1401

51.102

100

0.515
  comM Vibrio campbellii strain DS40M4

51.313

100

0.513
  comM Legionella pneumophila str. Paris

50.6

100

0.511
  comM Legionella pneumophila strain ERS1305867

50.6

100

0.511
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.941

100

0.469