Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   KXZ66_RS13000 Genome accession   NZ_CP079759
Coordinates   2516914..2517210 (-) Length   98 a.a.
NCBI ID   WP_003230162.1    Uniprot ID   A0A809FGR8
Organism   Bacillus sp. LJBS17     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2511914..2522210
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KXZ66_RS12955 (KXZ66_12950) tasA 2512321..2513106 (-) 786 WP_014477324.1 biofilm matrix protein TasA -
  KXZ66_RS12960 (KXZ66_12955) sipW 2513171..2513743 (-) 573 WP_003246088.1 signal peptidase I SipW -
  KXZ66_RS12965 (KXZ66_12960) tapA 2513727..2514488 (-) 762 WP_077671431.1 amyloid fiber anchoring/assembly protein TapA -
  KXZ66_RS12970 (KXZ66_12965) - 2514759..2515085 (+) 327 WP_021480018.1 YqzG/YhdC family protein -
  KXZ66_RS12975 (KXZ66_12970) - 2515127..2515306 (-) 180 WP_014480252.1 YqzE family protein -
  KXZ66_RS12980 (KXZ66_12975) comGG 2515378..2515752 (-) 375 WP_021480019.1 ComG operon protein ComGG Machinery gene
  KXZ66_RS12985 (KXZ66_12980) comGF 2515753..2516136 (-) 384 WP_031315212.1 ComG operon protein ComGF Machinery gene
  KXZ66_RS12990 (KXZ66_12985) comGE 2516162..2516509 (-) 348 WP_021480020.1 ComG operon protein 5 Machinery gene
  KXZ66_RS12995 (KXZ66_12990) comGD 2516493..2516924 (-) 432 WP_021480021.1 comG operon protein ComGD Machinery gene
  KXZ66_RS13000 (KXZ66_12995) comGC 2516914..2517210 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  KXZ66_RS13005 (KXZ66_13000) comGB 2517224..2518261 (-) 1038 WP_021480022.1 comG operon protein ComGB Machinery gene
  KXZ66_RS13010 (KXZ66_13005) comGA 2518248..2519318 (-) 1071 WP_004399124.1 competence protein ComGA Machinery gene
  KXZ66_RS22600 - 2519607..2519744 (-) 138 WP_021480024.1 hypothetical protein -
  KXZ66_RS13020 (KXZ66_13015) corA 2519746..2520699 (-) 954 WP_015483432.1 magnesium transporter CorA -
  KXZ66_RS13025 (KXZ66_13020) - 2520842..2522170 (+) 1329 WP_021480026.1 hemolysin family protein -

Sequence

Protein


Download         Length: 98 a.a.        Molecular weight: 10849.74 Da        Isoelectric Point: 6.7083

>NTDB_id=589326 KXZ66_RS13000 WP_003230162.1 2516914..2517210(-) (comGC) [Bacillus sp. LJBS17]
MNEKGFTLVEMLIVLFIISILLLITIPNVTKHNQTIQKKGCEGLQNMVKAQMTAFELDHEGQTPSLADLQSEGYVKKDAV
CPNGKRIIITGGEVKVEH

Nucleotide


Download         Length: 297 bp        

>NTDB_id=589326 KXZ66_RS13000 WP_003230162.1 2516914..2517210(-) (comGC) [Bacillus sp. LJBS17]
ATGAATGAGAAAGGATTTACACTTGTTGAAATGTTAATCGTGCTCTTTATTATTTCGATTTTGCTTTTAATTACGATACC
GAACGTCACGAAACATAACCAAACCATTCAAAAAAAGGGCTGTGAAGGCTTACAAAACATGGTTAAGGCACAAATGACTG
CATTTGAGCTTGATCATGAAGGACAAACTCCGAGCCTTGCCGATTTACAGTCAGAGGGCTATGTGAAAAAGGATGCTGTC
TGTCCAAATGGTAAGCGCATTATCATCACCGGCGGAGAAGTTAAGGTTGAACATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FGR8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

100

100

1
  comGC Staphylococcus aureus MW2

41.304

93.878

0.388
  comGC Staphylococcus aureus N315

41.304

93.878

0.388
  comYC Streptococcus suis isolate S10

49.333

76.531

0.378