Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   KXZ66_RS13010 Genome accession   NZ_CP079759
Coordinates   2518248..2519318 (-) Length   356 a.a.
NCBI ID   WP_004399124.1    Uniprot ID   A0A809FNW6
Organism   Bacillus sp. LJBS17     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2513248..2524318
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KXZ66_RS12965 (KXZ66_12960) tapA 2513727..2514488 (-) 762 WP_077671431.1 amyloid fiber anchoring/assembly protein TapA -
  KXZ66_RS12970 (KXZ66_12965) - 2514759..2515085 (+) 327 WP_021480018.1 YqzG/YhdC family protein -
  KXZ66_RS12975 (KXZ66_12970) - 2515127..2515306 (-) 180 WP_014480252.1 YqzE family protein -
  KXZ66_RS12980 (KXZ66_12975) comGG 2515378..2515752 (-) 375 WP_021480019.1 ComG operon protein ComGG Machinery gene
  KXZ66_RS12985 (KXZ66_12980) comGF 2515753..2516136 (-) 384 WP_031315212.1 ComG operon protein ComGF Machinery gene
  KXZ66_RS12990 (KXZ66_12985) comGE 2516162..2516509 (-) 348 WP_021480020.1 ComG operon protein 5 Machinery gene
  KXZ66_RS12995 (KXZ66_12990) comGD 2516493..2516924 (-) 432 WP_021480021.1 comG operon protein ComGD Machinery gene
  KXZ66_RS13000 (KXZ66_12995) comGC 2516914..2517210 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  KXZ66_RS13005 (KXZ66_13000) comGB 2517224..2518261 (-) 1038 WP_021480022.1 comG operon protein ComGB Machinery gene
  KXZ66_RS13010 (KXZ66_13005) comGA 2518248..2519318 (-) 1071 WP_004399124.1 competence protein ComGA Machinery gene
  KXZ66_RS22600 - 2519607..2519744 (-) 138 WP_021480024.1 hypothetical protein -
  KXZ66_RS13020 (KXZ66_13015) corA 2519746..2520699 (-) 954 WP_015483432.1 magnesium transporter CorA -
  KXZ66_RS13025 (KXZ66_13020) - 2520842..2522170 (+) 1329 WP_021480026.1 hemolysin family protein -
  KXZ66_RS13030 (KXZ66_13025) rsbRD 2522223..2523059 (-) 837 WP_021480027.1 RsbT co-antagonist protein RsbRD -
  KXZ66_RS13040 (KXZ66_13035) mgsR 2523283..2523663 (-) 381 WP_003230147.1 transcriptional regulator MgsR -
  KXZ66_RS13045 (KXZ66_13040) - 2523895..2524140 (+) 246 WP_003226300.1 DUF2626 domain-containing protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40458.64 Da        Isoelectric Point: 9.0175

>NTDB_id=589328 KXZ66_RS13010 WP_004399124.1 2518248..2519318(-) (comGA) [Bacillus sp. LJBS17]
MDSIEKVSKNLIEEAYLTKASDIHIVPRERDAIIHFRVDHALLKKRDMKKEECVRLISHFKFLSAMDIGERRKPQNGSLT
LKLKEGNVHLRMSTLPTINEESLVIRVMPQYNIPSIDKLSLFPKTGATLLSFLKHSHGMLIFTGPTGSGKTTTLYSLVQY
AKKHFNRNIVTLEDPVETRDEDVLQVQVNEKAGVTYSAGLKAILRHDPDMIILGEIRDAETAEIAVRAAMTGHLVLTSLH
TRDAKGAIYRLLEFGINMNEIEQTVIAIAAQRLVDLACPFCENGCSSVYCRQSRNTRRASVYELLYGKNLQQCIQEAKGN
HANYQYQTLRQIIRKGIALGYLTTNNYDRWVYHEKD

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=589328 KXZ66_RS13010 WP_004399124.1 2518248..2519318(-) (comGA) [Bacillus sp. LJBS17]
TTGGATTCAATAGAAAAGGTAAGCAAAAACTTGATTGAAGAGGCATATCTAACAAAGGCTTCTGATATTCACATCGTGCC
GAGGGAGCGGGACGCTATCATTCATTTTCGGGTCGATCATGCCTTGCTGAAAAAAAGGGACATGAAAAAAGAAGAGTGCG
TAAGACTGATTTCACATTTTAAATTTCTTTCAGCAATGGATATAGGTGAAAGGCGAAAGCCGCAAAACGGTTCGCTTACG
TTAAAGCTGAAAGAGGGAAATGTTCATTTAAGAATGTCAACGCTGCCCACAATTAATGAAGAAAGCCTCGTGATCAGAGT
GATGCCCCAATACAATATCCCTTCGATTGATAAATTGTCGCTATTTCCAAAGACAGGAGCCACATTACTCTCGTTTTTAA
AACATTCCCATGGCATGCTCATTTTTACCGGGCCAACTGGTTCAGGGAAGACTACCACACTATACTCTCTCGTTCAATAT
GCAAAAAAACACTTTAATCGAAATATTGTCACATTAGAGGACCCTGTTGAAACAAGGGATGAAGATGTTCTTCAGGTTCA
GGTGAATGAAAAAGCCGGTGTAACTTATTCTGCAGGTCTGAAAGCAATTTTGCGCCATGATCCCGATATGATTATTTTAG
GTGAGATCAGAGACGCGGAAACAGCTGAAATTGCGGTGCGGGCAGCGATGACGGGACATCTGGTACTAACGAGCCTTCAT
ACGAGAGACGCAAAGGGCGCCATTTACAGACTGCTTGAATTCGGTATCAATATGAATGAAATCGAACAGACTGTCATTGC
AATAGCGGCTCAGCGCTTGGTTGATTTGGCTTGCCCGTTTTGTGAAAACGGATGTTCATCAGTGTATTGCCGACAGTCAC
GAAATACCAGGAGAGCTAGCGTTTATGAGCTTCTATACGGGAAAAATCTTCAGCAATGTATCCAGGAGGCAAAAGGAAAT
CATGCAAATTACCAATATCAAACGCTTCGTCAAATTATCAGAAAAGGAATTGCGCTCGGCTATTTAACGACAAACAACTA
TGACCGGTGGGTTTATCATGAAAAAGATTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FNW6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

100

100

1