Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SPISAL_RS07435 Genome accession   NC_021291
Coordinates   1501797..1502258 (-) Length   153 a.a.
NCBI ID   WP_016353865.1    Uniprot ID   -
Organism   Spiribacter salinus M19-40     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1496797..1507258
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPISAL_RS07420 (SPISAL_07305) deoD 1497701..1498414 (-) 714 WP_016353862.1 purine-nucleoside phosphorylase -
  SPISAL_RS07425 (SPISAL_07310) - 1498565..1499164 (+) 600 WP_016353863.1 HAD-IB family hydrolase -
  SPISAL_RS07430 (SPISAL_07315) - 1499185..1501800 (+) 2616 WP_016353864.1 AMP-binding protein -
  SPISAL_RS07435 (SPISAL_07320) ssb 1501797..1502258 (-) 462 WP_016353865.1 single-stranded DNA-binding protein Machinery gene
  SPISAL_RS07440 (SPISAL_07325) - 1502362..1504086 (-) 1725 WP_016353866.1 bifunctional sulfate adenylyltransferase/adenylylsulfate kinase -
  SPISAL_RS07445 (SPISAL_07330) - 1504083..1505288 (-) 1206 WP_016353867.1 MFS transporter -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 16560.21 Da        Isoelectric Point: 4.6581

>NTDB_id=58902 SPISAL_RS07435 WP_016353865.1 1501797..1502258(-) (ssb) [Spiribacter salinus M19-40]
MARGINKVILVGNLGADPEVRYSAAGSAVTNARLATTDQWKDRQTGEQQERTEWHRLVFFSRLAEIAGEYLKKGSKVYVE
GRLQTRKWQGQDGQDRYTTEIVVNDMQMLDGAGGGMGGGGASSHAASQSAPEASQEPAPQTAPADDFDDDIPF

Nucleotide


Download         Length: 462 bp        

>NTDB_id=58902 SPISAL_RS07435 WP_016353865.1 1501797..1502258(-) (ssb) [Spiribacter salinus M19-40]
ATGGCACGTGGCATCAACAAGGTCATTCTGGTCGGTAATCTCGGGGCCGACCCCGAGGTTCGGTATTCGGCAGCGGGCAG
CGCGGTCACCAACGCGCGACTGGCCACGACCGATCAGTGGAAGGATCGGCAGACCGGCGAGCAGCAGGAGCGCACGGAGT
GGCACCGGCTGGTGTTCTTCAGCCGTCTGGCCGAGATCGCGGGCGAGTACCTGAAAAAGGGCTCGAAGGTGTATGTCGAG
GGTCGTTTGCAGACGCGCAAATGGCAGGGCCAGGACGGCCAGGATCGCTACACCACCGAAATCGTCGTCAACGACATGCA
GATGCTCGATGGCGCAGGCGGTGGCATGGGGGGCGGTGGCGCCAGCAGCCATGCCGCAAGCCAGTCAGCCCCGGAAGCCA
GCCAGGAGCCGGCCCCGCAGACAGCGCCCGCGGACGACTTCGACGACGATATCCCCTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

52

100

0.595
  ssb Glaesserella parasuis strain SC1401

50.562

100

0.588
  ssb Neisseria meningitidis MC58

48.555

100

0.549
  ssb Neisseria gonorrhoeae MS11

46.821

100

0.529
  ssb Latilactobacillus sakei subsp. sakei 23K

32.558

100

0.366

Multiple sequence alignment