Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   KX728_RS05555 Genome accession   NZ_CP079724
Coordinates   1124308..1125264 (-) Length   318 a.a.
NCBI ID   WP_215804599.1    Uniprot ID   -
Organism   Streptococcus oralis strain 34     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1119308..1130264
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KX728_RS05535 (KX728_05530) ftsW 1119352..1120575 (-) 1224 WP_000703343.1 cell division peptidoglycan polymerase FtsW -
  KX728_RS05540 (KX728_05535) prsA 1120763..1121704 (-) 942 WP_049485246.1 peptidylprolyl isomerase PrsA -
  KX728_RS05545 (KX728_05540) - 1121772..1122485 (-) 714 WP_215804601.1 O-methyltransferase -
  KX728_RS05550 (KX728_05545) pepF 1122487..1124289 (-) 1803 WP_215804600.1 oligoendopeptidase F Regulator
  KX728_RS05555 (KX728_05550) coiA 1124308..1125264 (-) 957 WP_215804599.1 competence protein CoiA Machinery gene
  KX728_RS05560 (KX728_05555) - 1125340..1126488 (-) 1149 WP_215804598.1 DUF1887 family protein -
  KX728_RS05565 (KX728_05560) tehB 1126665..1127525 (-) 861 WP_000413060.1 SAM-dependent methyltransferase TehB -
  KX728_RS05570 (KX728_05565) smpB 1127540..1128007 (-) 468 WP_001051750.1 SsrA-binding protein SmpB -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 37652.04 Da        Isoelectric Point: 9.1476

>NTDB_id=588980 KX728_RS05555 WP_215804599.1 1124308..1125264(-) (coiA) [Streptococcus oralis strain 34]
MFVARDAKGNLINALEKDVTKQAYTCPACGGGLRLRQGQSIRTHFAHESLRDCMAILENESPEHLGNKEALYHWAKKDNQ
VALEYSLPAIQQIADVLVNEKLALEVQCSPLSQKLLGDRSQGYRSQGYQVIWLLGEKLWLKERLTQLQRGFLYFSQNMGF
YVWELDFKKQVLRLKYLLHQDLRGKLHFQVKEFPYGKGNLLEILRFPYQKQKLASFSVEQDSTICHYIRQQLYYQTPYWM
KKQEEAYHQGDNLLNYQLDDWYPQVRPIESGDFLQIETDLASYYRNFQAYYQKNPKNNRQKLYPPAFYHLYFSKNVVK

Nucleotide


Download         Length: 957 bp        

>NTDB_id=588980 KX728_RS05555 WP_215804599.1 1124308..1125264(-) (coiA) [Streptococcus oralis strain 34]
ATGTTTGTAGCCAGAGATGCCAAGGGAAATTTGATAAACGCTCTCGAAAAAGATGTGACCAAGCAAGCTTATACTTGTCC
AGCCTGTGGTGGTGGACTACGATTGCGCCAAGGACAGAGTATTCGGACGCATTTTGCCCATGAATCTTTAAGAGATTGTA
TGGCTATTCTTGAAAATGAAAGTCCAGAACACTTGGGCAACAAAGAGGCTCTCTATCACTGGGCCAAGAAGGACAATCAG
GTCGCCTTAGAATATAGTCTGCCTGCGATTCAGCAGATAGCGGATGTTCTTGTCAATGAGAAACTAGCTCTGGAGGTTCA
GTGCAGCCCCTTGTCTCAAAAGCTTTTAGGTGATAGAAGCCAAGGATACCGTAGCCAAGGCTATCAGGTTATCTGGCTAC
TGGGAGAAAAACTCTGGTTAAAGGAGCGATTAACACAATTGCAAAGGGGATTTCTCTATTTTAGTCAAAATATGGGTTTC
TATGTTTGGGAACTAGATTTCAAAAAACAAGTTTTGAGACTCAAATATCTTTTGCATCAGGACCTACGTGGCAAGCTTCA
TTTTCAGGTCAAAGAATTTCCCTATGGAAAAGGAAATCTCTTGGAAATCCTACGATTTCCTTATCAAAAACAAAAGCTAG
CTAGTTTTTCAGTTGAGCAAGATTCCACTATCTGTCACTACATTCGCCAACAGTTGTACTACCAAACGCCTTACTGGATG
AAGAAGCAAGAAGAGGCCTATCATCAAGGAGACAATCTATTAAACTATCAACTGGACGACTGGTATCCCCAGGTCAGACC
GATAGAGTCAGGTGATTTTTTGCAGATTGAAACGGATTTGGCTAGCTATTATAGAAATTTTCAGGCTTACTATCAAAAAA
ATCCGAAAAATAATCGCCAAAAGCTCTATCCACCAGCCTTTTATCACTTATATTTCTCAAAAAATGTGGTAAAATAG

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(12-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

71.069

100

0.711
  coiA Streptococcus pneumoniae Rx1

70.44

100

0.704
  coiA Streptococcus pneumoniae D39

70.44

100

0.704
  coiA Streptococcus pneumoniae R6

70.44

100

0.704
  coiA Streptococcus pneumoniae TIGR4

70.126

100

0.701
  coiA Lactococcus lactis subsp. cremoris KW2

43.077

100

0.44