Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   KX728_RS05550 Genome accession   NZ_CP079724
Coordinates   1122487..1124289 (-) Length   600 a.a.
NCBI ID   WP_215804600.1    Uniprot ID   -
Organism   Streptococcus oralis strain 34     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1117487..1129289
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KX728_RS05535 (KX728_05530) ftsW 1119352..1120575 (-) 1224 WP_000703343.1 cell division peptidoglycan polymerase FtsW -
  KX728_RS05540 (KX728_05535) prsA 1120763..1121704 (-) 942 WP_049485246.1 peptidylprolyl isomerase PrsA -
  KX728_RS05545 (KX728_05540) - 1121772..1122485 (-) 714 WP_215804601.1 O-methyltransferase -
  KX728_RS05550 (KX728_05545) pepF 1122487..1124289 (-) 1803 WP_215804600.1 oligoendopeptidase F Regulator
  KX728_RS05555 (KX728_05550) coiA 1124308..1125264 (-) 957 WP_215804599.1 competence protein CoiA Machinery gene
  KX728_RS05560 (KX728_05555) - 1125340..1126488 (-) 1149 WP_215804598.1 DUF1887 family protein -
  KX728_RS05565 (KX728_05560) tehB 1126665..1127525 (-) 861 WP_000413060.1 SAM-dependent methyltransferase TehB -
  KX728_RS05570 (KX728_05565) smpB 1127540..1128007 (-) 468 WP_001051750.1 SsrA-binding protein SmpB -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69813.74 Da        Isoelectric Point: 4.6005

>NTDB_id=588979 KX728_RS05550 WP_215804600.1 1122487..1124289(-) (pepF) [Streptococcus oralis strain 34]
MVLQRHEINEKDTWDLSTIYPTDQAWEEALKDLTEKVQTASQYEGHLLDSADSLLEITEFSLDLERQVEKLYVYAHMKND
QDTREAKYQEYYAKAMTLYSQLEQAFSFYEPEFMEISEEQYAAFLEAQPKLQVYKHFFDKLLQKKDHVLSQREEELLAGA
GEIFGSASETFAILDNADISFPYVLDDEGKEVQLSHGTYIRLMESKNREVRRGAYEALYATYEQFQHTYAKTLQTNVKVQ
NYRAKVRNYKSARHAALAANFVPESVYDNLVAAVRKHLPLLHRYLELRSKILGISDLKMYDVYTPLSSVDYSFTYEEALK
KAEEALAVLGEDYLSRVKRAFSERWIDVYENQGKRSGAYSGGSYDTNAFMLLNWQDNLDNLFTLVHETGHSMHSSYTRET
QPYVYGDYSIFLAEIASTTNENILTEKLLEEVEDDATRFAILNNFLDGFRGTVFRQTQFAEFEHAIHQADQNGEVLTSDF
LNKLYADLNQEYYGLSKEDNPQIQYEWARIPHFYYNYYVYQYSTGFAAASALAEKIVHGSQEDRDRYIDYLKAGKSDYPL
NVMRKAGVDMEKEDYLNDAFAVFERRLNEFEALVEKLGLA

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=588979 KX728_RS05550 WP_215804600.1 1122487..1124289(-) (pepF) [Streptococcus oralis strain 34]
ATGGTATTACAACGACATGAAATAAATGAAAAAGATACATGGGATCTTTCGACAATCTACCCAACAGACCAGGCTTGGGA
AGAAGCCTTGAAAGATTTAACTGAAAAAGTACAAACAGCATCTCAGTATGAGGGACATCTTTTGGACAGCGCAGACAGTT
TGCTTGAGATCACAGAATTCTCACTCGACTTGGAACGCCAAGTTGAAAAGCTTTATGTCTATGCGCATATGAAAAATGAC
CAGGACACGCGTGAGGCCAAGTATCAAGAGTACTATGCTAAGGCAATGACCCTATACAGTCAGTTAGAACAAGCCTTTTC
ATTCTATGAACCTGAGTTTATGGAGATTAGCGAAGAGCAGTATGCGGCCTTCCTAGAAGCTCAACCAAAACTCCAAGTTT
ACAAGCACTTTTTTGACAAGCTCTTGCAAAAGAAAGACCATGTTCTTTCGCAACGTGAGGAAGAATTGCTTGCTGGAGCA
GGAGAAATCTTTGGTTCTGCTAGTGAAACCTTCGCTATTTTGGACAATGCGGATATTAGCTTCCCATACGTCCTTGATGA
CGAAGGCAAGGAAGTGCAACTCTCACACGGTACTTACATCCGTTTGATGGAGTCTAAAAACCGTGAAGTGCGTCGTGGTG
CCTATGAAGCCCTTTATGCGACTTACGAGCAATTCCAACACACTTATGCTAAGACCTTGCAGACAAATGTTAAGGTGCAA
AACTACCGCGCAAAAGTTCGCAACTATAAGAGTGCTCGCCATGCAGCTCTCGCAGCAAACTTTGTTCCAGAAAGTGTCTA
TGACAATCTAGTAGCAGCAGTTCGCAAGCATTTGCCACTCTTGCATCGTTACCTTGAACTTCGTTCTAAAATCTTGGGGA
TTTCAGATCTCAAGATGTATGATGTTTACACACCACTCTCGTCAGTAGATTATAGCTTTACCTACGAAGAAGCCTTGAAA
AAAGCTGAAGAAGCCTTGGCGGTCTTGGGTGAAGACTACTTGAGCCGTGTCAAACGGGCTTTCAGCGAGCGTTGGATTGA
TGTCTATGAAAACCAAGGCAAGCGTTCTGGTGCCTACTCTGGTGGTTCTTATGATACCAATGCCTTTATGCTTCTCAACT
GGCAGGATAATTTAGATAATCTCTTTACCCTTGTCCATGAAACAGGTCACAGTATGCACTCCAGCTATACTCGTGAAACT
CAGCCTTATGTTTACGGAGATTACTCTATCTTCTTGGCGGAGATTGCCTCAACCACAAACGAAAATATCTTGACAGAGAA
ATTGTTGGAAGAAGTAGAAGACGATGCGACTCGTTTTGCTATTCTTAATAACTTCCTAGACGGTTTCCGTGGAACAGTCT
TCCGTCAAACTCAATTCGCTGAGTTTGAACATGCTATCCATCAAGCAGATCAAAATGGAGAAGTATTGACAAGTGATTTC
CTCAATAAGCTCTACGCTGACTTGAACCAAGAGTACTATGGACTCAGCAAGGAAGACAATCCTCAGATTCAATACGAGTG
GGCGCGCATTCCACACTTCTACTATAACTACTATGTTTATCAATATTCAACTGGTTTTGCAGCTGCTTCAGCCTTGGCTG
AGAAGATTGTCCATGGTAGCCAAGAAGACCGTGACCGCTATATCGACTACCTCAAGGCAGGTAAGTCAGACTATCCGCTC
AATGTTATGAGAAAAGCGGGTGTTGATATGGAAAAAGAAGACTATCTTAACGATGCCTTTGCAGTCTTTGAACGACGCTT
GAATGAGTTTGAAGCCCTTGTTGAAAAATTGGGACTAGCTTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-581)

Oligopeptidase F (Peptidase_M3_N)

(112-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

67.617

99.333

0.672