Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   KX728_RS00850 Genome accession   NZ_CP079724
Coordinates   160965..161918 (+) Length   317 a.a.
NCBI ID   WP_215805163.1    Uniprot ID   -
Organism   Streptococcus oralis strain 34     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 155965..166918
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KX728_RS00805 (KX728_00805) - 156147..156512 (+) 366 WP_000286399.1 DUF1033 family protein -
  KX728_RS00810 (KX728_00810) comGA/cglA/cilD 156576..157517 (+) 942 WP_215805168.1 competence type IV pilus ATPase ComGA Machinery gene
  KX728_RS00815 (KX728_00815) comGB/cglB 157465..158481 (+) 1017 WP_215805178.1 competence type IV pilus assembly protein ComGB Machinery gene
  KX728_RS00820 (KX728_00820) comGC/cglC 158483..158806 (+) 324 WP_215805167.1 competence type IV pilus major pilin ComGC Machinery gene
  KX728_RS00825 (KX728_00825) comGD/cglD 158769..159203 (+) 435 WP_215805166.1 competence type IV pilus minor pilin ComGD Machinery gene
  KX728_RS00830 (KX728_00830) comGE/cglE 159166..159468 (+) 303 WP_000413364.1 competence type IV pilus minor pilin ComGE Machinery gene
  KX728_RS00835 (KX728_00835) comGF/cglF 159431..159892 (+) 462 WP_215805165.1 competence type IV pilus minor pilin ComGF Machinery gene
  KX728_RS00840 (KX728_00840) comGG/cglG 159870..160283 (+) 414 WP_215805164.1 competence type IV pilus minor pilin ComGG Machinery gene
  KX728_RS00845 (KX728_00845) - 160316..160906 (+) 591 Protein_149 class I SAM-dependent methyltransferase -
  KX728_RS00850 (KX728_00850) comYH 160965..161918 (+) 954 WP_215805163.1 class I SAM-dependent methyltransferase Machinery gene
  KX728_RS00855 (KX728_00855) - 161969..163159 (+) 1191 WP_215805162.1 acetate kinase -
  KX728_RS00860 (KX728_00860) rnpA 163309..163680 (+) 372 WP_000748120.1 ribonuclease P protein component -
  KX728_RS00865 (KX728_00865) - 163655..164482 (+) 828 WP_000728097.1 membrane protein insertase YidC -
  KX728_RS00870 (KX728_00870) jag 164497..165483 (+) 987 WP_215805161.1 RNA-binding cell elongation regulator Jag/EloR -
  KX728_RS00875 (KX728_00875) - 165539..166162 (+) 624 WP_215805160.1 ribonuclease P -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35606.58 Da        Isoelectric Point: 4.1443

>NTDB_id=588954 KX728_RS00850 WP_215805163.1 160965..161918(+) (comYH) [Streptococcus oralis strain 34]
MDFEKIEQAYTYLLENVQVIQSDLATNFYDALVEQNSIYLDGETELEQVKENNQALKRLALRKEEWLKTYQFLLMKAGQT
EPLQANHQFTPDAIALLLVLVVEELFEQEEISILEIGSGMGILGATFLTSLAKKVDYLGIEVDDLLIDLAASMADVIGLQ
AGFVQGDAVRPQMLKESDVVISDLPVGYYPDDAIASRYQVSSSQEHTYAHHLMMEQGLKYLKSDGYAIFLAPSDLLTSPQ
SDLLKGWLKDEVSLAAIIALPEDIFSTASQAKSIFVLQKKRDKEIEPFVYPLTSLQDPSVLFTFKENFQNWSKGTEI

Nucleotide


Download         Length: 954 bp        

>NTDB_id=588954 KX728_RS00850 WP_215805163.1 160965..161918(+) (comYH) [Streptococcus oralis strain 34]
ATGGATTTTGAAAAAATTGAACAAGCTTATACGTATTTACTAGAGAATGTCCAAGTCATCCAAAGTGATTTGGCGACCAA
CTTTTATGACGCCTTGGTAGAGCAAAATAGCATCTATCTGGATGGCGAGACAGAGCTAGAGCAGGTCAAGGAGAACAATC
AAGCCCTTAAGCGCTTAGCCCTTCGCAAGGAAGAGTGGCTCAAGACCTATCAGTTTCTCTTGATGAAGGCAGGACAAACG
GAGCCTTTACAGGCCAATCACCAGTTTACGCCGGATGCCATTGCCCTCCTCTTGGTACTTGTTGTGGAAGAGTTGTTTGA
ACAAGAGGAAATTAGCATCCTCGAAATAGGTTCTGGTATGGGGATTTTGGGGGCTACTTTCTTGACTTCTCTTGCTAAAA
AAGTAGATTACTTGGGAATCGAAGTGGATGACTTGCTGATTGATTTGGCAGCCAGTATGGCAGATGTGATTGGTTTACAA
GCTGGTTTTGTTCAAGGAGATGCCGTTCGTCCACAAATGCTTAAAGAAAGCGACGTGGTCATCAGCGACTTGCCTGTTGG
CTATTACCCAGACGATGCTATCGCTTCGCGCTATCAAGTGTCTTCTAGTCAAGAGCATACCTATGCCCATCATTTGATGA
TGGAACAAGGCCTCAAGTACCTTAAGTCAGATGGCTATGCTATTTTTCTAGCTCCGAGTGATTTATTGACCAGTCCTCAA
AGTGATTTATTAAAAGGGTGGCTCAAAGACGAAGTGAGTCTGGCTGCTATCATCGCTCTGCCAGAGGATATTTTCTCAAC
TGCAAGCCAAGCTAAAAGTATTTTTGTCTTACAGAAGAAAAGAGATAAAGAAATAGAACCCTTTGTCTATCCACTTACTA
GCTTGCAAGATCCGTCAGTTTTGTTTACCTTTAAAGAAAATTTTCAAAATTGGAGCAAAGGTACTGAAATATAA

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

57.556

98.107

0.565
  comYH Streptococcus mutans UA159

57.235

98.107

0.562