Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   SPISAL_RS01190 Genome accession   NC_021291
Coordinates   244509..246002 (-) Length   497 a.a.
NCBI ID   WP_016352644.1    Uniprot ID   R4VI98
Organism   Spiribacter salinus M19-40     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 239509..251002
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPISAL_RS08625 (SPISAL_01175) - 240654..241166 (+) 513 WP_016352641.1 c-type cytochrome -
  SPISAL_RS01180 (SPISAL_01180) - 241168..243153 (-) 1986 WP_016352642.1 cation:proton antiporter -
  SPISAL_RS01185 (SPISAL_01185) - 243178..244440 (-) 1263 WP_016352643.1 D-amino acid dehydrogenase -
  SPISAL_RS01190 (SPISAL_01190) comM 244509..246002 (-) 1494 WP_016352644.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  SPISAL_RS01195 (SPISAL_01195) - 246053..246325 (-) 273 WP_016352645.1 accessory factor UbiK family protein -
  SPISAL_RS01200 (SPISAL_01200) - 246568..246906 (+) 339 WP_016352646.1 P-II family nitrogen regulator -
  SPISAL_RS01205 (SPISAL_01205) - 246929..248176 (+) 1248 WP_016352647.1 ammonium transporter -
  SPISAL_RS01210 (SPISAL_01210) - 248284..249168 (+) 885 WP_016352648.1 NAD(P)-dependent oxidoreductase -
  SPISAL_RS01215 (SPISAL_01215) - 249165..249800 (-) 636 WP_016352649.1 SPOR domain-containing protein -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 52853.20 Da        Isoelectric Point: 8.3699

>NTDB_id=58894 SPISAL_RS01190 WP_016352644.1 244509..246002(-) (comM) [Spiribacter salinus M19-40]
MSLAMVRARAALGIDAPSVDVEVHLGGGLPSFSIVGLPNTALREARDRVRGALTTSGFEFPRRRITVNLSPADLPKDGAR
FDLAIALGILAASGQLKPASLQGGVFSAELALSGALRPVPGTLPVAVQCTQASEWLVVAADNGEEAALGGARVYAAAHLL
DVCAHLRASPSLVPVTAPSTGAQRPNSPDLAEVRGQHRARRALEIAAAGGHSLLFCGPPGSGKSMLAARLPGLLPPMTNH
EALESAAIHSVAKGRIDATAWGQRPFRQPHHTASSRALTGGGRPPRPGEISLAHHGVLFLDELPEFPRDALEALREPLET
GEIHVARVGTQLRFPARFQLVAAMNPCPCGYLGEQHTDCRCTPNQVRQYQNRISGPLLDRFDMQVDVPRLPPTELEACAP
GECTATVAARVATTRRHQQDAYGKAAAGLVGDELERHSALDPQGQSVLRHATEHFALSARAWHRCRRLARTIADLEGSDT
IRERHIAEALGYRKTVG

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=58894 SPISAL_RS01190 WP_016352644.1 244509..246002(-) (comM) [Spiribacter salinus M19-40]
TTGTCACTGGCCATGGTTCGGGCGCGTGCCGCCCTGGGTATCGACGCCCCGTCGGTTGACGTCGAGGTTCACCTCGGCGG
CGGCCTACCGTCTTTCTCGATCGTGGGGCTACCCAACACGGCCTTGCGGGAAGCGCGGGACCGCGTCCGCGGCGCGTTGA
CGACCAGCGGTTTCGAATTTCCTCGTCGGCGTATCACCGTCAACCTGTCACCAGCAGACTTGCCAAAAGACGGCGCTCGC
TTCGACCTGGCGATTGCGCTCGGCATTCTGGCCGCCTCAGGGCAACTTAAACCAGCCTCACTCCAGGGCGGCGTCTTCAG
CGCCGAACTGGCCCTCTCCGGTGCCCTGCGTCCGGTCCCAGGCACGCTACCCGTTGCCGTGCAGTGCACTCAGGCCAGCG
AGTGGCTCGTTGTGGCCGCGGACAATGGCGAGGAGGCGGCGTTGGGCGGTGCCCGGGTTTATGCCGCCGCGCACTTGCTC
GATGTCTGTGCGCATCTGCGCGCCTCTCCCTCACTGGTCCCTGTGACGGCGCCCTCAACGGGTGCGCAGCGCCCCAACAG
CCCTGATCTGGCCGAGGTGCGTGGCCAACATCGAGCCCGCCGCGCACTGGAAATCGCCGCCGCGGGTGGGCACAGCCTGC
TGTTCTGCGGCCCACCCGGTAGCGGCAAGAGCATGCTCGCTGCCCGGCTGCCGGGCCTGCTACCCCCGATGACAAACCAC
GAGGCACTGGAATCAGCGGCCATTCACTCCGTTGCCAAAGGGCGGATCGATGCCACTGCATGGGGTCAGCGCCCGTTTCG
TCAGCCCCATCACACCGCCTCGTCCCGCGCACTTACTGGCGGGGGCCGGCCTCCGCGTCCCGGTGAGATTTCCTTGGCGC
ACCACGGCGTCCTTTTCCTTGACGAGCTCCCGGAATTCCCTCGGGACGCGCTGGAAGCGCTGCGAGAACCCCTGGAGACC
GGCGAGATCCACGTCGCCCGTGTCGGCACACAGCTGCGTTTCCCCGCCCGCTTCCAGCTCGTGGCGGCCATGAACCCCTG
CCCCTGCGGCTACTTGGGCGAGCAGCACACGGATTGCCGATGCACCCCGAATCAGGTGCGGCAGTACCAGAACCGCATCA
GCGGGCCGTTACTCGATCGATTTGATATGCAGGTTGATGTCCCGCGCCTGCCCCCCACCGAACTCGAAGCGTGCGCCCCG
GGTGAGTGCACCGCGACGGTCGCAGCACGGGTCGCAACGACCCGACGTCACCAGCAGGACGCCTATGGCAAAGCCGCTGC
GGGGCTGGTCGGTGATGAACTGGAGCGACATAGCGCACTGGATCCGCAAGGCCAGTCCGTGCTTCGTCACGCCACAGAGC
ACTTCGCGCTCTCGGCCCGGGCCTGGCACCGCTGTCGCCGTCTTGCACGAACAATCGCCGATCTGGAGGGCAGCGACACC
ATCCGCGAACGCCACATTGCGGAGGCCCTTGGCTACCGTAAAACCGTGGGTTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-393)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB R4VI98

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

50.505

99.598

0.503
  comM Vibrio cholerae strain A1552

50.505

99.598

0.503
  comM Haemophilus influenzae Rd KW20

49.602

100

0.501
  comM Glaesserella parasuis strain SC1401

47.4

100

0.477
  comM Legionella pneumophila str. Paris

46.414

100

0.469
  comM Legionella pneumophila strain ERS1305867

46.414

100

0.469
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

41.036

100

0.414

Multiple sequence alignment