Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   KXJ79_RS00935 Genome accession   NZ_CP079716
Coordinates   204126..205619 (+) Length   497 a.a.
NCBI ID   WP_058402713.1    Uniprot ID   A0AAW3LS99
Organism   Pseudomonas amygdali strain HS1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 199126..210619
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KXJ79_RS00925 (KXJ79_00925) - 199685..203083 (-) 3399 WP_219170743.1 toxin VasX -
  KXJ79_RS00930 (KXJ79_00930) - 203406..203948 (-) 543 WP_219170744.1 GNAT family N-acetyltransferase -
  KXJ79_RS00935 (KXJ79_00935) comM 204126..205619 (+) 1494 WP_058402713.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  KXJ79_RS00940 (KXJ79_00940) - 205680..206528 (-) 849 WP_117140274.1 aminotransferase class IV -
  KXJ79_RS00945 (KXJ79_00945) - 206577..207464 (-) 888 WP_219170745.1 mitomycin antibiotic biosynthesis protein -
  KXJ79_RS00950 (KXJ79_00950) - 207477..208412 (-) 936 WP_057402752.1 hypothetical protein -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 53061.85 Da        Isoelectric Point: 7.5248

>NTDB_id=588817 KXJ79_RS00935 WP_058402713.1 204126..205619(+) (comM) [Pseudomonas amygdali strain HS1]
MSLAIVHSRAQVGVEAPAVTVEAHLANGLPALTLVGLPEGAVKESKDRVRSAILNSGLDFPARRITLNLAPADLPKDGGR
FDLAIALGLLAASGQVPLVALQDVECLGELALSGAIRPIQGVLPAALAARAAERTLIIPAVNAEEACLASGLRVIAVNHL
LELVAHFNGRTVIAPYQSSGLLHQPKPYPDLSEVQGQTAAKRALVIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLDE
HEALEVAAIQSVASQVPLTSWPQRPFRQPHHSASGPALVGGGSRPQPGEITLAHHGVLFLDELPEFDRRVLEVLREPLES
GHIVISRARDRVRFPARFQLVAAMNPCPCGYLGEPTGRCRCSTEQVQRYRNKLSGPLLDRIDLHLTVAREATALNPDPTT
SENTASAAAVVAEARHRQQRRQGCANAFLDLPGLREYCALSSVDESWLETACERLTLSLRSAHRLLKVARTLADLEQVDA
ISRSHLAEALQYRPSNN

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=588817 KXJ79_RS00935 WP_058402713.1 204126..205619(+) (comM) [Pseudomonas amygdali strain HS1]
ATGTCGCTGGCTATCGTCCATAGTCGTGCCCAGGTCGGGGTGGAAGCCCCGGCGGTTACTGTTGAAGCGCATCTGGCCAA
CGGCCTGCCAGCCCTGACGCTGGTGGGGTTGCCGGAGGGGGCGGTCAAGGAGAGCAAGGACCGGGTGCGCAGCGCCATTC
TCAATTCCGGGCTGGATTTTCCGGCGCGGCGGATCACGCTCAACCTCGCGCCGGCTGATTTGCCGAAGGATGGCGGGCGG
TTCGATCTGGCGATTGCGCTGGGTTTGCTGGCTGCCAGCGGGCAGGTGCCGCTGGTTGCGTTACAGGATGTTGAATGCCT
GGGCGAGCTGGCGCTGTCGGGGGCGATTCGGCCGATTCAGGGCGTGCTGCCTGCTGCGCTGGCGGCACGTGCAGCGGAAC
GGACACTGATTATTCCTGCGGTGAACGCTGAGGAAGCGTGTCTGGCCTCGGGGCTGCGGGTGATTGCGGTGAATCACTTG
CTGGAGCTGGTTGCGCATTTCAACGGGCGCACGGTGATTGCGCCGTATCAGTCCAGCGGCTTGCTGCATCAGCCCAAGCC
GTATCCGGATTTAAGCGAAGTGCAGGGTCAGACGGCTGCAAAACGTGCGCTAGTGATTGCCGCTGCCGGGGCGCACAACC
TGCTGTTCAGCGGGCCGCCTGGCACCGGCAAGACATTGCTCGCCAGCCGCCTGCCGGGTTTGTTGCCACCGCTGGACGAG
CACGAAGCGCTGGAGGTGGCGGCGATTCAGTCGGTCGCCAGTCAGGTGCCGCTGACCAGTTGGCCGCAGCGGCCGTTTCG
CCAGCCACATCACTCGGCGTCCGGGCCTGCGCTGGTGGGCGGTGGCAGTCGTCCGCAACCTGGCGAGATCACGTTGGCGC
ATCACGGCGTTTTATTTCTTGATGAACTGCCGGAGTTCGATCGCCGCGTGCTGGAGGTTTTACGCGAACCACTGGAGTCC
GGGCATATCGTGATTTCCCGTGCGCGGGATCGCGTGCGCTTTCCGGCGCGGTTCCAACTGGTGGCAGCGATGAACCCGTG
TCCCTGTGGCTATCTCGGTGAGCCGACCGGGCGCTGCCGCTGTTCCACTGAGCAGGTGCAGCGCTATCGCAACAAGTTGT
CCGGCCCGCTGCTGGACCGCATCGACCTGCACCTGACCGTCGCCCGAGAAGCCACCGCCCTCAACCCTGACCCGACCACC
AGTGAAAACACCGCCAGTGCCGCAGCCGTGGTCGCTGAGGCGAGACACCGTCAGCAACGTCGTCAGGGCTGTGCCAATGC
GTTTCTCGATCTGCCGGGGCTGCGTGAGTACTGCGCGCTGTCCAGTGTCGATGAAAGCTGGCTGGAGACGGCGTGCGAGC
GTCTGACCCTGTCGTTGCGCTCGGCGCATCGATTGCTGAAGGTGGCGCGGACTTTGGCGGATCTGGAGCAGGTGGACGCG
ATCAGCCGCAGTCATCTGGCCGAGGCGTTGCAATATCGGCCTTCGAATAATTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.747

99.598

0.545
  comM Glaesserella parasuis strain SC1401

53.8

100

0.541
  comM Vibrio campbellii strain DS40M4

53.737

99.598

0.535
  comM Haemophilus influenzae Rd KW20

53

100

0.533
  comM Legionella pneumophila str. Paris

48.911

100

0.497
  comM Legionella pneumophila strain ERS1305867

48.911

100

0.497
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.418

100

0.459