Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   KV708_RS01035 Genome accession   NZ_CP079703
Coordinates   242177..243715 (+) Length   512 a.a.
NCBI ID   WP_057094340.1    Uniprot ID   -
Organism   Comamonas thiooxydans strain N1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 237177..248715
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KV708_RS01015 (KV708_01015) - 237902..239230 (-) 1329 WP_057094334.1 sulfatase -
  KV708_RS01020 (KV708_01020) - 239344..240336 (-) 993 WP_046461164.1 Bug family tripartite tricarboxylate transporter substrate binding protein -
  KV708_RS01025 (KV708_01025) - 240477..241448 (-) 972 WP_057094336.1 tripartite tricarboxylate transporter substrate binding protein -
  KV708_RS01030 (KV708_01030) - 241541..242092 (+) 552 WP_057094338.1 MarR family winged helix-turn-helix transcriptional regulator -
  KV708_RS01035 (KV708_01035) comM 242177..243715 (+) 1539 WP_057094340.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  KV708_RS01040 (KV708_01040) - 243729..244658 (-) 930 WP_057094342.1 LysR substrate-binding domain-containing protein -
  KV708_RS01045 (KV708_01045) - 244770..245948 (+) 1179 WP_057094344.1 YbfB/YjiJ family MFS transporter -
  KV708_RS01050 (KV708_01050) - 245983..247050 (+) 1068 WP_057094347.1 nitronate monooxygenase family protein -

Sequence

Protein


Download         Length: 512 a.a.        Molecular weight: 54831.83 Da        Isoelectric Point: 7.5708

>NTDB_id=588720 KV708_RS01035 WP_057094340.1 242177..243715(+) (comM) [Comamonas thiooxydans strain N1]
MGLALVQSRALLGLQAPAVTVEVHLANGLPSFTLVGLADVEVKEARERVRAAIVNAGLEFPNNKRITVNLAPADLPKDSG
RFDLPIALGILAASGQIDARRLADYEFAGELSLTGALRPVRGALATALALQRQQQRVRLVLPPDSALEAAFVPAIEVFGA
AHLLDVVRQFIAHDCTLSEHGDGVEGWQRVHSRPAEASLPSLDLREVRGQMQAKRALEIAAAGAHGVLMIGPPGSGKSML
AQRFAGLLPGMTDEEALEAAAIASLSGRFTPQLWRQRPFAAPHHTASSIALVGGGSPPRPGEISYAHCGALFLDELPEFA
RSALEALREPLETGRITIVRAVQRAEFPARFQLVAAMNPCPCGFWGSRIRACRCSPDQVARYQARISGPLLDRIDLHVEV
AALSPEELLAAPEGESSAAVQQRVSAARDKALQRQGLPNHQLQGAQLDTHLQLEPEALTFAHKAAARLGWSARGTHRALK
VARTIADLADSDSITQTHLAEALQYRRALMQP

Nucleotide


Download         Length: 1539 bp        

>NTDB_id=588720 KV708_RS01035 WP_057094340.1 242177..243715(+) (comM) [Comamonas thiooxydans strain N1]
ATGGGTCTGGCACTGGTTCAAAGTCGTGCACTGCTGGGCTTGCAGGCACCGGCTGTCACGGTGGAGGTCCATCTGGCCAA
CGGACTGCCTTCATTCACCCTGGTGGGTCTGGCGGATGTGGAGGTCAAGGAGGCCCGCGAGCGCGTGCGCGCAGCCATCG
TCAATGCGGGGCTGGAGTTCCCGAACAACAAGCGCATCACGGTCAATCTGGCTCCGGCGGATCTGCCCAAGGACTCAGGC
CGCTTTGACCTGCCGATAGCGCTGGGCATTCTGGCGGCCAGCGGGCAGATCGATGCACGGCGGCTCGCCGATTATGAGTT
TGCAGGAGAGCTGTCGCTGACCGGTGCCCTGCGCCCGGTACGCGGCGCCCTGGCTACTGCGCTGGCCCTGCAGCGTCAGC
AACAGCGCGTGCGGCTGGTGCTGCCGCCAGACAGTGCGCTGGAGGCAGCCTTTGTGCCGGCCATCGAAGTCTTCGGCGCC
GCGCATCTGCTGGATGTGGTCAGGCAGTTCATCGCGCATGACTGCACCCTGTCGGAGCATGGCGATGGCGTGGAGGGCTG
GCAGCGGGTGCACTCCAGACCTGCTGAAGCTTCTTTGCCGTCGCTGGATCTGCGCGAGGTGCGCGGCCAGATGCAGGCCA
AGCGCGCGCTTGAAATTGCAGCTGCCGGCGCACATGGTGTGCTGATGATCGGCCCTCCGGGCTCGGGGAAATCCATGCTG
GCCCAGCGCTTTGCGGGTTTGCTGCCGGGCATGACCGATGAGGAAGCGCTCGAAGCCGCCGCCATTGCCAGCCTCAGCGG
TCGTTTCACGCCGCAGCTGTGGCGCCAGCGGCCATTTGCCGCTCCTCATCACACGGCCAGTTCCATCGCGTTGGTCGGCG
GCGGCTCTCCGCCCCGGCCCGGCGAGATTTCATATGCCCATTGCGGGGCGCTGTTTCTCGACGAGCTGCCCGAGTTCGCG
CGCAGCGCCCTGGAGGCCCTGCGCGAGCCGCTGGAGACTGGGCGCATCACCATCGTGCGGGCCGTGCAGAGGGCGGAGTT
TCCGGCCCGTTTCCAGCTGGTGGCAGCCATGAACCCCTGTCCCTGCGGCTTCTGGGGGTCGCGCATCAGGGCCTGCCGCT
GCTCGCCCGATCAGGTGGCACGTTATCAGGCACGCATCAGCGGTCCCTTGCTGGACCGTATCGATCTGCATGTGGAGGTG
GCGGCACTGTCGCCCGAGGAGTTGCTGGCAGCGCCCGAAGGGGAGAGCAGCGCTGCCGTGCAGCAACGCGTGAGCGCGGC
CAGGGACAAGGCCTTGCAGCGCCAGGGCCTGCCCAATCATCAGTTGCAGGGGGCACAGCTCGACACGCATCTGCAGCTGG
AGCCCGAGGCGCTGACCTTTGCCCACAAGGCTGCAGCGCGCCTTGGCTGGTCGGCGCGCGGCACGCACCGGGCGTTGAAG
GTGGCGCGAACCATTGCCGATCTGGCGGACTCGGATTCCATCACGCAAACCCATCTGGCCGAGGCATTGCAATACCGCCG
AGCGCTGATGCAGCCGTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(203-407)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(414-506)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

53.137

99.609

0.529
  comM Vibrio campbellii strain DS40M4

51.373

99.609

0.512
  comM Haemophilus influenzae Rd KW20

51.181

99.219

0.508
  comM Glaesserella parasuis strain SC1401

49.02

99.609

0.488
  comM Legionella pneumophila str. Paris

47.5

100

0.482
  comM Legionella pneumophila strain ERS1305867

47.5

100

0.482
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.118

99.609

0.439