Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   SA27298_RS09065 Genome accession   NZ_AP018548
Coordinates   1846432..1847022 (-) Length   196 a.a.
NCBI ID   WP_003031812.1    Uniprot ID   -
Organism   Streptococcus anginosus strain CCUG 27928     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1841432..1852022
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SA27298_RS09040 (SA27298_1843) spx 1841781..1842179 (-) 399 WP_003026638.1 transcriptional regulator Spx -
  SA27298_RS09045 (SA27298_1844) recA 1842266..1843411 (-) 1146 WP_018543618.1 recombinase RecA Machinery gene
  SA27298_RS09050 (SA27298_1845) cinA 1843456..1844727 (-) 1272 WP_003031814.1 competence/damage-inducible protein A Machinery gene
  SA27298_RS09055 (SA27298_1847) - 1845327..1845740 (+) 414 WP_018543619.1 EamA family transporter -
  SA27298_RS09060 (SA27298_1848) - 1845843..1846421 (-) 579 WP_003031817.1 DNA-3-methyladenine glycosylase I -
  SA27298_RS09065 (SA27298_1849) ruvA 1846432..1847022 (-) 591 WP_003031812.1 Holliday junction branch migration protein RuvA Machinery gene
  SA27298_RS09070 (SA27298_1850) - 1847093..1848028 (-) 936 WP_126438392.1 IS30 family transposase -
  SA27298_RS09075 (SA27298_1851) hexB 1848217..1850163 (-) 1947 WP_003032320.1 DNA mismatch repair endonuclease MutL Machinery gene
  SA27298_RS09080 (SA27298_1852) - 1850418..1850858 (+) 441 WP_003032335.1 LytTR family DNA-binding domain-containing protein -
  SA27298_RS09085 (SA27298_1853) - 1850855..1851313 (+) 459 WP_003032341.1 DUF3021 domain-containing protein -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21598.08 Da        Isoelectric Point: 6.4894

>NTDB_id=58865 SA27298_RS09065 WP_003031812.1 1846432..1847022(-) (ruvA) [Streptococcus anginosus strain CCUG 27928]
MYEYFKGILSKITAKYIVVEVGQIGYILHVANPYAYSGQVNQEIQVFVHQVVREDAQLLYGFRTEDEKQLFLNLISVSGI
GPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGKKTAQQMVLDLEGKVVATGVTPKQVAVAATSDNQELEEAMEAML
ALGYKAAELKKIKKFFEGTTDTAENYIKSALKMLVK

Nucleotide


Download         Length: 591 bp        

>NTDB_id=58865 SA27298_RS09065 WP_003031812.1 1846432..1847022(-) (ruvA) [Streptococcus anginosus strain CCUG 27928]
ATGTACGAATATTTTAAAGGAATTTTAAGTAAAATCACAGCCAAATATATTGTAGTGGAAGTGGGGCAAATTGGCTATAT
CCTGCATGTGGCAAATCCCTATGCCTATTCAGGTCAGGTCAATCAGGAGATTCAAGTTTTTGTTCATCAGGTGGTCAGAG
AGGATGCCCAGCTCCTCTACGGTTTTCGCACAGAGGATGAAAAGCAGCTTTTTCTCAATTTGATTTCGGTTTCTGGTATT
GGACCTGTTTCTGCTCTTGCGATAATCGCTGCCGATGATAATGCCGGCTTGGTGCAGGCCATTGAGCAGAAAAACATTAC
TTATCTGACAAAATTTCCTAAAATCGGCAAAAAAACAGCCCAACAAATGGTGCTGGACTTAGAAGGTAAGGTTGTGGCAA
CAGGTGTTACCCCTAAGCAAGTTGCTGTTGCAGCTACTAGTGACAATCAAGAATTGGAAGAAGCTATGGAAGCTATGTTG
GCTCTGGGCTACAAGGCGGCTGAACTCAAGAAAATTAAGAAATTCTTTGAAGGTACGACCGATACAGCTGAGAACTACAT
CAAGTCGGCTCTTAAAATGCTGGTAAAATAA

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

Helix-hairpin-helix domain (HHH_5)

(71-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

85.787

100

0.862
  ruvA Streptococcus pneumoniae R6

85.787

100

0.862
  ruvA Streptococcus pneumoniae D39

85.787

100

0.862
  ruvA Bacillus subtilis subsp. subtilis str. 168

40.488

100

0.423

Multiple sequence alignment