Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   KW114_RS04360 Genome accession   NZ_CP079097
Coordinates   995148..996665 (+) Length   505 a.a.
NCBI ID   WP_218798044.1    Uniprot ID   -
Organism   Methylococcus capsulatus strain KN2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 990148..1001665
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KW114_RS04325 (KW114_04325) - 990287..991369 (-) 1083 WP_218798042.1 efflux RND transporter periplasmic adaptor subunit -
  KW114_RS04330 (KW114_04330) grxC 991417..991680 (-) 264 WP_010961372.1 glutaredoxin 3 -
  KW114_RS04335 (KW114_04335) - 991831..992049 (+) 219 WP_026046091.1 DUF2892 domain-containing protein -
  KW114_RS04340 (KW114_04340) trxC 992052..992471 (+) 420 WP_218798043.1 thioredoxin TrxC -
  KW114_RS04345 (KW114_04345) - 992815..994257 (-) 1443 WP_306440747.1 ammonium transporter -
  KW114_RS04350 (KW114_04350) glnK 994288..994626 (-) 339 WP_010961376.1 P-II family nitrogen regulator -
  KW114_RS04355 (KW114_04355) - 994888..995139 (+) 252 WP_017366411.1 accessory factor UbiK family protein -
  KW114_RS04360 (KW114_04360) comM 995148..996665 (+) 1518 WP_218798044.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  KW114_RS04365 (KW114_04365) rep 996662..998665 (+) 2004 WP_218798045.1 DNA helicase Rep -
  KW114_RS04380 (KW114_04380) - 999097..999390 (+) 294 Protein_866 IS3 family transposase -
  KW114_RS04385 (KW114_04385) - 999704..999964 (-) 261 WP_218798046.1 hypothetical protein -
  KW114_RS04390 (KW114_04390) - 999991..1000500 (-) 510 WP_256996505.1 hypothetical protein -
  KW114_RS04395 (KW114_04395) - 1000490..1001254 (-) 765 WP_218798048.1 glycine zipper 2TM domain-containing protein -

Sequence

Protein


Download         Length: 505 a.a.        Molecular weight: 54087.98 Da        Isoelectric Point: 7.2923

>NTDB_id=587670 KW114_RS04360 WP_218798044.1 995148..996665(+) (comM) [Methylococcus capsulatus strain KN2]
MALAIVHSRACQGIDAPEVTVEVHIAPGLPNLTIVGLPETAVRESKDRVRSALVTTGFEFPAQRITVNLAPADLPKEGGR
FDLPIALGILAASKQIRTEPLLALECVGELALTGELRPVPGALPVALQSRRAERSLIVPWDNAGEAALVSGACVLPARHL
LDVCAHLDGSRPLAAAEPCTEASQASEEFPDLAEVRGQFQAKRALEIAAAGRHNLLMLGPPGTGKSMLASRMPGILPDLT
ETEALETAAVASVSGMPFDPAVWRRPPYRAPHHTASAPALVGGGSSPKPGEISLAHNGVLFLDELPEFDRRVLEVLREPL
ESGTITISRATQRLDFPARFQLVAAMNPCPCGYLGDASGRCHCSAEQVARYRARISGPLLDRIDIHIDVPRQDPATLLDG
ASPSEETSVQVRSRVTAARERALRRSGQPNALLTPRQIERHCAPDSAGRALLERAMTRLNLSHRAYHRILKLARTIADLD
GSEAITATHIGEAIGYRRLDRAATR

Nucleotide


Download         Length: 1518 bp        

>NTDB_id=587670 KW114_RS04360 WP_218798044.1 995148..996665(+) (comM) [Methylococcus capsulatus strain KN2]
ATGGCGCTCGCGATCGTCCACAGCCGCGCCTGCCAGGGCATCGACGCACCGGAAGTGACGGTGGAAGTCCACATCGCTCC
GGGGCTGCCCAATCTCACCATCGTGGGACTGCCGGAAACCGCGGTGCGCGAGAGCAAGGACCGGGTGCGCAGCGCTCTCG
TCACCACCGGCTTCGAGTTTCCCGCCCAACGCATCACCGTCAACCTGGCCCCGGCCGATCTGCCCAAGGAAGGCGGCCGT
TTCGACCTGCCCATCGCCCTCGGCATACTGGCCGCTTCCAAGCAGATCCGTACCGAGCCTCTGCTGGCGCTGGAGTGTGT
CGGCGAGCTGGCGCTTACCGGTGAACTGCGTCCGGTCCCCGGAGCCTTGCCCGTCGCCCTCCAGTCGCGCCGGGCCGAGC
GCAGCCTGATCGTACCCTGGGACAATGCCGGCGAAGCGGCGCTGGTCTCCGGCGCCTGCGTGCTCCCGGCGCGCCATCTG
CTGGACGTGTGCGCCCATCTGGACGGCAGCCGCCCGCTCGCCGCCGCCGAACCGTGCACCGAAGCGTCTCAGGCAAGCGA
GGAATTCCCCGATCTCGCCGAAGTCCGCGGCCAGTTCCAGGCCAAGCGCGCCCTGGAGATCGCCGCCGCCGGCCGCCACA
ACCTGCTGATGCTGGGGCCGCCGGGCACCGGTAAATCCATGCTGGCCTCGCGCATGCCCGGCATCCTGCCCGACCTGACC
GAGACGGAAGCATTGGAAACCGCAGCGGTCGCCTCGGTCAGCGGGATGCCCTTCGACCCGGCAGTTTGGCGCCGACCGCC
GTACCGCGCCCCTCATCACACTGCCTCCGCACCGGCGCTGGTAGGCGGCGGGAGCAGTCCCAAACCCGGGGAGATTTCGC
TGGCCCATAACGGCGTGCTGTTCCTGGACGAGTTGCCGGAATTCGACCGGCGGGTGCTGGAGGTCCTGCGCGAACCCCTG
GAGAGCGGCACCATCACCATTTCCCGCGCCACCCAACGGCTGGATTTCCCCGCCCGTTTCCAGCTCGTCGCCGCGATGAA
TCCCTGCCCCTGCGGCTATCTGGGCGATGCCTCCGGGCGCTGCCATTGCTCAGCCGAACAGGTGGCCCGCTACCGTGCAC
GCATCTCCGGACCTCTCCTGGACCGGATCGACATCCACATCGACGTGCCCCGCCAGGACCCGGCCACACTTCTGGACGGC
GCGTCCCCGAGCGAGGAGACCAGCGTTCAGGTCCGATCCCGCGTGACTGCCGCCCGCGAGCGGGCGCTCCGCCGCAGCGG
CCAGCCCAACGCACTGCTCACGCCGCGTCAGATCGAGCGCCATTGCGCCCCCGACAGTGCGGGACGCGCCTTGTTGGAAC
GGGCCATGACACGGCTGAATCTGTCGCACCGCGCCTACCATCGCATTTTGAAGCTGGCCCGCACCATCGCCGATCTGGAC
GGCAGCGAGGCAATCACAGCCACCCACATCGGAGAAGCCATCGGCTACCGGCGTCTCGACCGCGCCGCGACCCGATGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-394)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(406-497)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.886

99.208

0.564
  comM Vibrio campbellii strain DS40M4

56.687

99.208

0.562
  comM Haemophilus influenzae Rd KW20

54.563

99.802

0.545
  comM Glaesserella parasuis strain SC1401

53.438

100

0.539
  comM Legionella pneumophila str. Paris

48.996

98.614

0.483
  comM Legionella pneumophila strain ERS1305867

48.996

98.614

0.483
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.047

100

0.473