Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   KW112_RS12915 Genome accession   NZ_CP079096
Coordinates   2774131..2775648 (-) Length   505 a.a.
NCBI ID   WP_218800357.1    Uniprot ID   -
Organism   Methylococcus capsulatus strain BH     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2769131..2780648
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KW112_RS12880 (KW112_12880) - 2769546..2770310 (+) 765 WP_218800386.1 glycine zipper 2TM domain-containing protein -
  KW112_RS12885 (KW112_12885) - 2770300..2770809 (+) 510 WP_249385288.1 hypothetical protein -
  KW112_RS12890 (KW112_12890) - 2770836..2771096 (+) 261 WP_218800384.1 hypothetical protein -
  KW112_RS12895 (KW112_12895) - 2771410..2771703 (-) 294 Protein_2548 IS3 family transposase -
  KW112_RS12910 (KW112_12910) rep 2772131..2774134 (-) 2004 WP_218800358.1 DNA helicase Rep -
  KW112_RS12915 (KW112_12915) comM 2774131..2775648 (-) 1518 WP_218800357.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  KW112_RS12920 (KW112_12920) - 2775657..2775908 (-) 252 WP_010961377.1 accessory factor UbiK family protein -
  KW112_RS12925 (KW112_12925) glnK 2776170..2776508 (+) 339 WP_010961376.1 P-II family nitrogen regulator -
  KW112_RS12930 (KW112_12930) - 2776539..2777981 (+) 1443 WP_283255642.1 ammonium transporter -
  KW112_RS12935 (KW112_12935) trxC 2778325..2778744 (-) 420 WP_010961373.1 thioredoxin TrxC -
  KW112_RS12940 (KW112_12940) - 2778747..2778965 (-) 219 WP_026046091.1 DUF2892 domain-containing protein -
  KW112_RS12945 (KW112_12945) grxC 2779116..2779379 (+) 264 WP_010961372.1 glutaredoxin 3 -
  KW112_RS12950 (KW112_12950) - 2779427..2780509 (+) 1083 WP_010961371.1 efflux RND transporter periplasmic adaptor subunit -

Sequence

Protein


Download         Length: 505 a.a.        Molecular weight: 54142.05 Da        Isoelectric Point: 7.3154

>NTDB_id=587659 KW112_RS12915 WP_218800357.1 2774131..2775648(-) (comM) [Methylococcus capsulatus strain BH]
MALAIVHSRACQGIDAPEVTVEVHIAPGLPNLTIVGLPETAVRESKDRVRSALVTTGFEFPAQRITVNLAPADLPKEGGR
FDLPIALGILAASKQIRTEHLLALECVGELALTGELRPVPGALPVALQSRRAERSLIVPWDNAGEAALVSGACVLPARHL
LDVCAHLDGSRPLAAAEPCTEASQASEEFPDLAEVRGQFQAKRALEIAAAGRHNLLMLGPPGTGKSMLASRMPGILPDLT
ETEALETAAVASVSGMPFDPAVWRRPPYRAPHHTASAPALVGGGSSPKPGEISLAHNGVLFLDELPEFDRRVLEVLREPL
ESGTITISRATQRLDFPARFQLVAAMNPCPCGYLGDASGRCHCSAEQVARYRARISGPLLDRIDIHIDVPRQDPATLMDG
ASPSEETSVQVRSRVTAARERALRRSGQPNALLTPRQIERHCAPDSAGRALLERAMTRLNLSHRAYHRILKLARTIADLD
GSEAITATHIGEAIGYRRLDRAAPR

Nucleotide


Download         Length: 1518 bp        

>NTDB_id=587659 KW112_RS12915 WP_218800357.1 2774131..2775648(-) (comM) [Methylococcus capsulatus strain BH]
ATGGCGCTCGCGATCGTCCACAGCCGGGCCTGCCAGGGCATCGACGCACCGGAGGTGACGGTGGAAGTCCACATCGCTCC
GGGGCTGCCCAATCTCACCATCGTGGGACTGCCGGAAACCGCGGTGCGCGAGAGCAAGGACCGGGTGCGCAGCGCTCTCG
TCACCACCGGCTTCGAATTTCCCGCCCAACGCATCACCGTCAATCTGGCCCCGGCCGACCTGCCCAAGGAAGGCGGCCGT
TTCGACCTGCCCATCGCCCTCGGCATACTGGCCGCTTCCAAGCAGATCCGTACCGAGCATCTGCTGGCGCTGGAGTGTGT
CGGCGAGCTGGCGCTTACCGGTGAACTGCGTCCGGTCCCCGGAGCCTTGCCCGTCGCCCTCCAGTCGCGCCGTGCCGAGC
GCAGCCTGATCGTACCCTGGGACAATGCCGGCGAAGCGGCGCTGGTCTCCGGCGCCTGCGTGCTCCCGGCGCGCCATCTG
CTGGACGTGTGCGCCCATCTGGACGGCAGCCGCCCGCTCGCCGCCGCCGAACCGTGCACCGAAGCGTCTCAGGCAAGCGA
GGAATTCCCCGATCTCGCCGAAGTCCGCGGCCAGTTCCAGGCCAAGCGCGCCCTGGAGATCGCCGCCGCCGGCCGCCACA
ACCTGCTGATGCTGGGGCCGCCGGGCACCGGCAAATCCATGCTGGCCTCGCGCATGCCCGGCATCCTGCCCGACCTGACC
GAGACGGAAGCATTGGAAACCGCGGCGGTCGCCTCGGTCAGCGGGATGCCCTTCGACCCGGCAGTTTGGCGCCGACCGCC
GTACCGCGCCCCTCATCACACTGCCTCCGCACCGGCGCTGGTAGGCGGCGGGAGCAGCCCCAAACCCGGGGAGATTTCGC
TGGCCCATAACGGCGTGCTGTTCCTGGACGAGTTGCCGGAATTCGACCGGCGGGTGCTGGAGGTCCTGCGCGAACCCCTG
GAGAGCGGCACCATCACCATTTCCCGCGCCACCCAACGGCTGGATTTCCCCGCCCGTTTCCAGCTCGTCGCCGCGATGAA
TCCCTGCCCCTGCGGCTATCTGGGCGATGCCTCCGGGCGCTGCCATTGCTCGGCCGAACAGGTGGCCCGCTACCGTGCAC
GCATCTCCGGACCTCTCCTGGACCGGATCGACATCCACATCGACGTGCCCCGCCAGGACCCGGCCACACTTATGGACGGC
GCGTCCCCGAGCGAGGAGACCAGCGTTCAGGTCCGATCCCGCGTGACTGCCGCCCGCGAGCGGGCGCTCCGCCGCAGCGG
CCAGCCCAACGCACTGCTCACGCCGCGTCAGATCGAGCGCCATTGCGCCCCCGACAGTGCGGGACGCGCCTTGTTGGAAC
GGGCCATGACACGGCTGAATCTGTCGCACCGCGCCTACCATCGCATTTTGAAGCTGGCCCGCACCATCGCCGATCTGGAT
GGCAGCGAGGCAATCACAGCCACCCACATCGGAGAAGCCATCGGCTACCGGCGTCTCGACCGCGCCGCGCCCCGATGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(406-497)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.886

99.208

0.564
  comM Vibrio campbellii strain DS40M4

56.687

99.208

0.562
  comM Haemophilus influenzae Rd KW20

54.563

99.802

0.545
  comM Glaesserella parasuis strain SC1401

53.438

100

0.539
  comM Legionella pneumophila str. Paris

48.996

98.614

0.483
  comM Legionella pneumophila strain ERS1305867

48.996

98.614

0.483
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.047

100

0.473