Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   KW115_RS13155 Genome accession   NZ_CP079095
Coordinates   2702321..2703841 (-) Length   506 a.a.
NCBI ID   WP_218806161.1    Uniprot ID   -
Organism   Methylococcus sp. Mc7     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 2700321..2713383 2702321..2703841 within 0


Gene organization within MGE regions


Location: 2700321..2713383
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KW115_RS13150 (KW115_13150) rep 2700321..2702324 (-) 2004 WP_218806160.1 DNA helicase Rep -
  KW115_RS13155 (KW115_13155) comM 2702321..2703841 (-) 1521 WP_218806161.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  KW115_RS13160 (KW115_13160) - 2703850..2704101 (-) 252 WP_218806162.1 accessory factor UbiK family protein -
  KW115_RS13165 (KW115_13165) glnK 2704362..2704700 (+) 339 WP_010961376.1 P-II family nitrogen regulator -
  KW115_RS13170 (KW115_13170) - 2704732..2706174 (+) 1443 WP_305080242.1 ammonium transporter -
  KW115_RS13175 (KW115_13175) - 2706292..2706744 (-) 453 WP_218806163.1 DUF1810 domain-containing protein -
  KW115_RS13180 (KW115_13180) trxC 2706790..2707209 (-) 420 WP_218806164.1 thioredoxin TrxC -
  KW115_RS13185 (KW115_13185) - 2707213..2707431 (-) 219 WP_218806165.1 DUF2892 domain-containing protein -
  KW115_RS13190 (KW115_13190) grxC 2707582..2707845 (+) 264 WP_218806166.1 glutaredoxin 3 -
  KW115_RS13195 (KW115_13195) - 2707893..2708975 (+) 1083 WP_218806167.1 efflux RND transporter periplasmic adaptor subunit -
  KW115_RS13200 (KW115_13200) - 2708972..2712046 (+) 3075 WP_218806168.1 efflux RND transporter permease subunit -
  KW115_RS13205 (KW115_13205) - 2712127..2713377 (-) 1251 WP_218806169.1 DDE-type integrase/transposase/recombinase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54181.12 Da        Isoelectric Point: 7.5100

>NTDB_id=587635 KW115_RS13155 WP_218806161.1 2702321..2703841(-) (comM) [Methylococcus sp. Mc7]
MALAIVHSRARQGIEAPEVTVEVHISPGLPNLTIVGLPETAVRESKDRVRGALITTGFEFPAQRITVNLAPADLPKEGGR
FDLPIALGILAASKQLRADRLADLECVGELALTGELRPVPGALPVALQSRRAERNLIVPWDNAGEAALVSGACVLPARHL
LDVCAHLDGSRPLAAVESRTETAPASEEPPDLAEVRGQFQAKRALEIAAAGRHNLLMLGPPGTGKSMLASRMPGILPDLT
EDEALETAAVASVSGMPFDPAAWRRPPYRAPHHTASAPALVGGGSAPKPGEISLAHNGVLFLDELPEFDRRVLEVLREPL
ESGGITISRAAQRLDFPARFQLIAAMNPCPCGYLGDASGRCHCSAEQVARYRARISGPLLDRIDMHVDVPRQDPATLLDG
APRNEETSAQVRSRVIAARERALQRSGQPNALLTPRLIERHCMPDSAGRALLEQAMARLNLSHRAYHRILKLARTIADLA
GSDAITSAHIGEAIGYRRLDRAPTAR

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=587635 KW115_RS13155 WP_218806161.1 2702321..2703841(-) (comM) [Methylococcus sp. Mc7]
ATGGCGCTCGCCATCGTCCACAGCCGGGCCCGCCAGGGCATCGAGGCGCCGGAAGTCACCGTGGAAGTCCATATTTCCCC
GGGGCTCCCCAACCTCACCATCGTCGGCCTGCCGGAAACCGCCGTGCGCGAGAGCAAGGACCGGGTGCGCGGCGCGCTCA
TTACCACCGGTTTCGAATTTCCCGCCCAGCGCATCACCGTCAACCTGGCTCCGGCCGATCTGCCCAAGGAAGGCGGCCGT
TTCGACCTGCCGATCGCCCTCGGCATCCTGGCCGCTTCGAAGCAGCTCCGCGCCGATCGGCTGGCGGACCTGGAATGCGT
CGGCGAGCTGGCGCTCACCGGCGAACTGCGCCCGGTGCCCGGCGCCCTGCCGGTCGCCCTCCAGTCGCGCCGCGCCGAGC
GGAACCTGATCGTACCCTGGGACAACGCCGGCGAAGCGGCCCTGGTCTCCGGCGCCTGCGTGCTCCCGGCCCGCCATCTG
CTGGACGTGTGCGCCCATCTGGACGGCAGCCGCCCCCTCGCCGCCGTCGAATCACGCACCGAAACGGCTCCGGCCAGCGA
GGAGCCGCCCGATCTCGCCGAAGTCCGCGGCCAGTTCCAGGCCAAGCGCGCCCTGGAAATCGCCGCCGCCGGCCGCCATA
ACCTGCTGATGCTGGGCCCGCCCGGCACCGGCAAATCCATGCTGGCCTCGCGCATGCCCGGCATCCTGCCCGACCTGACC
GAGGACGAAGCGCTGGAAACCGCGGCGGTCGCCTCGGTCAGCGGCATGCCCTTCGACCCGGCGGCCTGGCGCCGCCCGCC
GTACCGCGCGCCCCATCACACCGCCTCCGCCCCGGCGCTGGTCGGCGGAGGAAGCGCGCCCAAGCCCGGCGAGATTTCGC
TGGCCCACAACGGCGTGCTGTTCCTGGACGAGCTGCCGGAATTCGACCGGCGCGTCCTGGAAGTCCTGCGCGAGCCCTTG
GAAAGCGGCGGCATCACCATTTCCCGCGCCGCCCAGCGGCTGGATTTTCCTGCCCGCTTCCAGCTCATCGCGGCGATGAA
CCCCTGCCCCTGCGGCTACCTGGGCGACGCCTCCGGGCGCTGCCATTGCTCGGCCGAGCAGGTTGCGCGCTACCGCGCGC
GCATCTCCGGACCACTCCTGGACCGGATCGACATGCACGTCGACGTACCCCGCCAAGACCCGGCCACGCTCCTGGACGGC
GCACCCCGGAACGAAGAAACCAGCGCCCAGGTCCGGTCCCGCGTGATCGCCGCCCGCGAGCGGGCGCTCCAACGCAGCGG
CCAGCCCAACGCCCTGCTCACGCCGCGCCTGATCGAGCGCCACTGCATGCCCGACAGCGCGGGACGTGCCTTGCTGGAAC
AGGCCATGGCGCGGCTGAACCTGTCGCACCGCGCCTATCACCGCATCTTGAAGCTGGCCCGCACCATCGCCGATCTCGCC
GGGAGCGATGCGATCACATCCGCCCACATCGGCGAAGCCATCGGCTACCGGCGTCTCGACCGGGCACCCACCGCCCGATG
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-497)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-394)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

57.086

99.012

0.565
  comM Vibrio campbellii strain DS40M4

56.436

99.802

0.563
  comM Haemophilus influenzae Rd KW20

55.159

99.605

0.549
  comM Glaesserella parasuis strain SC1401

53.861

99.802

0.538
  comM Legionella pneumophila str. Paris

49.398

98.419

0.486
  comM Legionella pneumophila strain ERS1305867

49.398

98.419

0.486
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.85

100

0.47