Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   KVH38_RS14000 Genome accession   NZ_CP078509
Coordinates   2965532..2967028 (+) Length   498 a.a.
NCBI ID   WP_019405714.1    Uniprot ID   -
Organism   Stutzerimonas stutzeri strain S116     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2960532..2972028
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KVH38_RS13970 (KVH38_13970) sutA 2960844..2961173 (-) 330 WP_011911739.1 transcriptional regulator SutA -
  KVH38_RS13975 (KVH38_13975) - 2961251..2961676 (-) 426 WP_011911738.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  KVH38_RS13980 (KVH38_13980) - 2961778..2963028 (-) 1251 WP_041755263.1 ammonium transporter -
  KVH38_RS13985 (KVH38_13985) - 2963145..2964461 (-) 1317 WP_011911736.1 ammonium transporter -
  KVH38_RS13990 (KVH38_13990) glnK 2964500..2964838 (-) 339 WP_003096476.1 P-II family nitrogen regulator -
  KVH38_RS13995 (KVH38_13995) - 2965235..2965495 (+) 261 WP_013981620.1 accessory factor UbiK family protein -
  KVH38_RS14000 (KVH38_14000) comM 2965532..2967028 (+) 1497 WP_019405714.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  KVH38_RS14005 (KVH38_14005) - 2967158..2969131 (+) 1974 Protein_2750 BCCT family transporter -
  KVH38_RS14010 (KVH38_14010) - 2969171..2970808 (-) 1638 WP_017246172.1 putative bifunctional diguanylate cyclase/phosphodiesterase -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 53127.05 Da        Isoelectric Point: 7.7464

>NTDB_id=587554 KVH38_RS14000 WP_019405714.1 2965532..2967028(+) (comM) [Stutzerimonas stutzeri strain S116]
MSLAIVHSRAQIGVEAPAVTVEAHLANGLPALTLVGLPETAVKESKDRVRSAILTSGFDFPARRITLNLAPADLPKDGGR
FDLAIALGILAASGQLPGERLEQLECLGELALSGALRPVQGVLPAALAARAAGRALLVPRANAEEASLASGLTVFAAEHL
LEVAAHFNGVTPLEPYVAQGLLRQVQPYPDLADVQGQQAAKRGLLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLDE
QEALEVAAIHSVASHSPLQHWPQRPFRQPHHSASGPALVGGGSRPQPGEITLAHQGVLFLDELPEFDRKVLEVLREPLES
GHIVIARARDKVRFPARFQLVAAMNPCPCGYLGDPNGRCRCTPEQIQRYRNKLSGPLLDRIDLHLTVAREATALNAAPQT
AQSSAVLAAQVAEARRLQLARQGCANAFLDLVGLREHCQLTAEDQAWLERACERLALSLRAAHRLLKVARTLADLEQAER
IGRQHLAEALQYRPGSQA

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=587554 KVH38_RS14000 WP_019405714.1 2965532..2967028(+) (comM) [Stutzerimonas stutzeri strain S116]
ATGTCCCTGGCCATCGTCCATAGCCGCGCTCAGATCGGCGTCGAAGCCCCGGCGGTGACCGTCGAGGCGCATCTGGCCAA
CGGCCTGCCGGCGCTGACCCTGGTCGGCCTGCCGGAAACCGCCGTCAAGGAGAGCAAGGACCGGGTGCGCAGCGCCATCC
TGACCTCCGGTTTCGATTTCCCCGCCCGACGCATCACGCTCAATCTCGCCCCTGCCGATCTGCCCAAGGACGGTGGTCGC
TTCGACCTGGCCATCGCGCTGGGCATCCTCGCCGCCAGCGGACAGCTGCCCGGCGAACGTCTGGAGCAGCTGGAATGCCT
GGGCGAACTGGCGTTGTCCGGTGCCTTGCGCCCGGTCCAGGGCGTGCTGCCGGCCGCCCTCGCCGCGCGTGCCGCCGGCC
GTGCGCTGCTGGTGCCGCGAGCCAATGCCGAGGAAGCCAGCCTCGCCTCGGGCCTGACCGTGTTTGCCGCCGAGCATCTG
CTGGAAGTTGCCGCCCACTTCAACGGCGTTACCCCGCTCGAGCCCTACGTGGCCCAGGGGCTGCTGCGGCAGGTCCAGCC
CTACCCCGACCTGGCCGACGTACAGGGCCAGCAGGCGGCCAAACGCGGCCTGCTGATCGCCGCGGCCGGCGCACACAACC
TGCTGTTCTCCGGACCGCCCGGCACCGGCAAGACGCTATTGGCCAGCCGTCTGCCCGGCCTGCTGCCGCCGCTGGATGAG
CAGGAGGCGCTGGAAGTGGCCGCGATTCATTCGGTGGCCAGCCACAGCCCGCTGCAGCACTGGCCGCAGCGCCCGTTCCG
CCAGCCCCATCACAGTGCATCGGGCCCGGCACTGGTGGGTGGCGGCAGCCGGCCGCAACCGGGCGAGATCACCCTGGCGC
ATCAGGGTGTGCTGTTTCTCGACGAGCTACCGGAGTTCGACCGCAAGGTGCTGGAGGTGCTGCGCGAGCCACTGGAATCG
GGCCATATCGTCATCGCCCGGGCGCGGGACAAGGTGCGTTTTCCGGCGCGCTTCCAGCTGGTGGCGGCAATGAACCCCTG
CCCGTGCGGCTATCTGGGCGACCCTAATGGTCGCTGCCGCTGCACGCCGGAGCAAATCCAGCGCTACCGCAACAAGCTCT
CCGGACCGCTGCTCGACCGCATCGACCTGCATCTGACCGTGGCGCGCGAGGCCACCGCCCTCAACGCAGCGCCACAGACC
GCCCAGAGCAGCGCCGTGCTCGCCGCACAGGTGGCCGAGGCGCGGCGACTGCAACTCGCCCGCCAGGGCTGCGCCAACGC
CTTTCTCGACCTTGTCGGCCTGCGTGAGCACTGCCAGCTGACCGCCGAGGACCAGGCCTGGCTGGAGCGCGCCTGCGAGC
GTCTCGCACTGTCCCTGCGCGCCGCACACCGGTTGCTCAAGGTCGCACGCACCCTGGCCGACCTGGAGCAGGCCGAACGC
ATCGGCCGGCAACATCTGGCCGAAGCGCTGCAATATCGCCCCGGCAGCCAGGCCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.566

99.398

0.562
  comM Glaesserella parasuis strain SC1401

55.578

100

0.56
  comM Vibrio campbellii strain DS40M4

56.162

99.398

0.558
  comM Haemophilus influenzae Rd KW20

54.89

100

0.552
  comM Legionella pneumophila str. Paris

50.988

100

0.518
  comM Legionella pneumophila strain ERS1305867

50.988

100

0.518
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.924

100

0.464