Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilI   Type   Machinery gene
Locus tag   KWY95_RS06030 Genome accession   NZ_CP078117
Coordinates   1148742..1149350 (+) Length   202 a.a.
NCBI ID   WP_003701059.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain SK92679     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1143742..1154350
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KWY95_RS06005 (KWY95_06005) - 1144337..1144669 (+) 333 WP_003687908.1 hypothetical protein -
  KWY95_RS06010 (KWY95_06010) - 1145000..1145509 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  KWY95_RS06015 (KWY95_06015) - 1145741..1146322 (-) 582 WP_003701053.1 superoxide dismutase -
  KWY95_RS06020 (KWY95_06020) dnaB 1146485..1147891 (+) 1407 WP_003701055.1 replicative DNA helicase -
  KWY95_RS06025 (KWY95_06025) pilH 1148045..1148710 (+) 666 WP_003701057.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  KWY95_RS06030 (KWY95_06030) pilI 1148742..1149350 (+) 609 WP_003701059.1 type IV pilus modification protein PilV Machinery gene
  KWY95_RS06035 (KWY95_06035) pilJ 1149347..1150324 (+) 978 WP_003701060.1 PilW family protein Machinery gene
  KWY95_RS06040 (KWY95_06040) pilK 1150303..1150914 (+) 612 WP_003701063.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  KWY95_RS06045 (KWY95_06045) pilL 1150916..1151389 (+) 474 WP_025456240.1 PilX family type IV pilin Machinery gene
  KWY95_RS06050 (KWY95_06050) - 1151459..1151767 (-) 309 WP_025456241.1 AzlD family protein -
  KWY95_RS06055 (KWY95_06055) - 1151764..1152475 (-) 712 Protein_1163 AzlC family ABC transporter permease -
  KWY95_RS06060 (KWY95_06060) dut 1152641..1153093 (+) 453 WP_003701071.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 21925.87 Da        Isoelectric Point: 4.9831

>NTDB_id=587035 KWY95_RS06030 WP_003701059.1 1148742..1149350(+) (pilI) [Neisseria gonorrhoeae strain SK92679]
MKNNDCLRLKNPQSGMALIEVLVAMLVLTIGILALLSVQLRTVASVREAETQTIVSQITQNLMEGMLMNPTIDSDGNKKN
YNLYTEPYTPTSSDGDFKLNNLISKTDLAKAQLDRFGYELKQALPDAVAIHYAVCKDSSGNAPTLSGNTFSSNCDKKANG
DTLIKVLWVNDSAGDSDIARTNLEVSGGNIVYTYQARVGGRE

Nucleotide


Download         Length: 609 bp        

>NTDB_id=587035 KWY95_RS06030 WP_003701059.1 1148742..1149350(+) (pilI) [Neisseria gonorrhoeae strain SK92679]
ATGAAGAATAATGATTGCTTGCGCCTGAAAAATCCCCAGTCCGGTATGGCGTTGATAGAAGTCTTGGTCGCTATGCTCGT
TCTGACCATCGGTATTTTGGCATTGCTGTCCGTACAGTTGCGGACGGTCGCTTCCGTCAGGGAAGCGGAGACGCAAACCA
TCGTCAGCCAAATCACGCAAAACCTGATGGAAGGAATGTTGATGAATCCGACCATTGATTCGGACGGCAATAAGAAAAAC
TATAATCTTTACACGGAGCCGTACACCCCCACTTCCTCTGACGGCGATTTCAAGCTTAATAATTTGATAAGTAAGACGGA
TTTGGCAAAAGCCCAGTTGGACAGGTTCGGTTATGAATTGAAACAAGCCTTGCCGGATGCGGTAGCTATTCATTACGCCG
TCTGCAAGGATTCGTCGGGTAACGCGCCGACATTGTCCGGCAATACTTTTTCTTCAAATTGCGACAAGAAGGCAAACGGG
GATACTTTGATTAAAGTATTGTGGGTAAATGATTCGGCAGGGGATTCGGATATCGCCCGTACGAATCTTGAAGTGAGCGG
CGGCAATATCGTATATACCTATCAGGCAAGGGTCGGAGGTCGTGAATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilI Neisseria gonorrhoeae MS11

95.545

100

0.955
  pilV Neisseria gonorrhoeae MS11

95.545

100

0.955
  pilV Neisseria meningitidis 8013

84.951

100

0.866