Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   KWY95_RS06040 Genome accession   NZ_CP078117
Coordinates   1150303..1150914 (+) Length   203 a.a.
NCBI ID   WP_003701063.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain SK92679     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1145303..1155914
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KWY95_RS06015 (KWY95_06015) - 1145741..1146322 (-) 582 WP_003701053.1 superoxide dismutase -
  KWY95_RS06020 (KWY95_06020) dnaB 1146485..1147891 (+) 1407 WP_003701055.1 replicative DNA helicase -
  KWY95_RS06025 (KWY95_06025) pilH 1148045..1148710 (+) 666 WP_003701057.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  KWY95_RS06030 (KWY95_06030) pilI 1148742..1149350 (+) 609 WP_003701059.1 type IV pilus modification protein PilV Machinery gene
  KWY95_RS06035 (KWY95_06035) pilJ 1149347..1150324 (+) 978 WP_003701060.1 PilW family protein Machinery gene
  KWY95_RS06040 (KWY95_06040) pilK 1150303..1150914 (+) 612 WP_003701063.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  KWY95_RS06045 (KWY95_06045) pilL 1150916..1151389 (+) 474 WP_025456240.1 PilX family type IV pilin Machinery gene
  KWY95_RS06050 (KWY95_06050) - 1151459..1151767 (-) 309 WP_025456241.1 AzlD family protein -
  KWY95_RS06055 (KWY95_06055) - 1151764..1152475 (-) 712 Protein_1163 AzlC family ABC transporter permease -
  KWY95_RS06060 (KWY95_06060) dut 1152641..1153093 (+) 453 WP_003701071.1 dUTP diphosphatase -
  KWY95_RS06065 (KWY95_06065) dapC 1153165..1154352 (+) 1188 WP_003701073.1 succinyldiaminopimelate transaminase -
  KWY95_RS06070 (KWY95_06070) yaaA 1154508..1155287 (+) 780 WP_003687925.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 22098.86 Da        Isoelectric Point: 5.3780

>NTDB_id=587037 KWY95_RS06040 WP_003701063.1 1150303..1150914(+) (pilK) [Neisseria gonorrhoeae strain SK92679]
MRKQNTLTGIPTSDGQRGSALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGEFQVLDLEYTA
DSKVTFSENCEKGLCTAVNVRTNNNGNEEAFGNIVVQGTPTVEAVKRSCPAKSGKSSTGLCIDNQGVEYEKGTGNVSKMP
RYIIEYLGEKNNQNIYRVTAKAWGKNANTVVVLQSYVGNNDEQ

Nucleotide


Download         Length: 612 bp        

>NTDB_id=587037 KWY95_RS06040 WP_003701063.1 1150303..1150914(+) (pilK) [Neisseria gonorrhoeae strain SK92679]
ATGCGCAAACAGAACACTTTGACAGGAATCCCGACTTCTGACGGACAGAGGGGGTCCGCACTGTTTATCGTGCTGATGGT
GATGATAGTCGTGGCCTTTTTGGTTGTAACTGCCGCCCAGTCCTACAATACCGAACAGAGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTAGCCGAGGCGGCTTTGAGGGAAGGCGAATTTCAGGTTTTGGATTTGGAATATACTGCG
GATAGTAAGGTTACATTTAGCGAAAACTGTGAAAAAGGCCTGTGTACCGCAGTGAATGTGCGGACAAATAATAATGGTAA
TGAAGAGGCTTTTGGCAATATCGTGGTGCAAGGCACGCCCACCGTTGAGGCGGTGAAGCGTTCTTGCCCTGCAAAGTCTG
GCAAAAGTTCTACCGGCCTGTGCATTGACAATCAGGGAGTGGAATATGAGAAAGGTACGGGAAACGTCAGCAAAATGCCG
CGTTATATTATCGAATATTTGGGCGAGAAGAATAACCAAAATATTTACAGGGTTACTGCCAAGGCTTGGGGTAAGAATGC
CAATACCGTGGTCGTCCTGCAATCTTATGTAGGCAATAATGATGAGCAATAA

Domains

Predicted by InterProScan.

Type IV pilus assembly protein PilX C-term (PilX)

(92-198)

PilX N-terminal (PilX_N)

(17-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

99.015

100

0.99