Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilJ   Type   Machinery gene
Locus tag   KWY95_RS06035 Genome accession   NZ_CP078117
Coordinates   1149347..1150324 (+) Length   325 a.a.
NCBI ID   WP_003701060.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain SK92679     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1144347..1155324
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KWY95_RS06010 (KWY95_06010) - 1145000..1145509 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  KWY95_RS06015 (KWY95_06015) - 1145741..1146322 (-) 582 WP_003701053.1 superoxide dismutase -
  KWY95_RS06020 (KWY95_06020) dnaB 1146485..1147891 (+) 1407 WP_003701055.1 replicative DNA helicase -
  KWY95_RS06025 (KWY95_06025) pilH 1148045..1148710 (+) 666 WP_003701057.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  KWY95_RS06030 (KWY95_06030) pilI 1148742..1149350 (+) 609 WP_003701059.1 type IV pilus modification protein PilV Machinery gene
  KWY95_RS06035 (KWY95_06035) pilJ 1149347..1150324 (+) 978 WP_003701060.1 PilW family protein Machinery gene
  KWY95_RS06040 (KWY95_06040) pilK 1150303..1150914 (+) 612 WP_003701063.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  KWY95_RS06045 (KWY95_06045) pilL 1150916..1151389 (+) 474 WP_025456240.1 PilX family type IV pilin Machinery gene
  KWY95_RS06050 (KWY95_06050) - 1151459..1151767 (-) 309 WP_025456241.1 AzlD family protein -
  KWY95_RS06055 (KWY95_06055) - 1151764..1152475 (-) 712 Protein_1163 AzlC family ABC transporter permease -
  KWY95_RS06060 (KWY95_06060) dut 1152641..1153093 (+) 453 WP_003701071.1 dUTP diphosphatase -
  KWY95_RS06065 (KWY95_06065) dapC 1153165..1154352 (+) 1188 WP_003701073.1 succinyldiaminopimelate transaminase -
  KWY95_RS06070 (KWY95_06070) yaaA 1154508..1155287 (+) 780 WP_003687925.1 peroxide stress protein YaaA -

Sequence


Protein


Download         Length: 325 a.a.        Molecular weight: 35736.87 Da        Isoelectric Point: 9.3550

>NTDB_id=587036 KWY95_RS06035 WP_003701060.1 1149347..1150324(+) (pilJ) [Neisseria gonorrhoeae strain SK92679]
MKRKMLNVPKGGYDGMKGFTIVEFLVAGLLSIIVLIAVVSSYFTSRKLNDVANERLAIQQDLRNAATLIVRDARMAGSFG
CFNMFEHTKDDIVDSSNQTQSSPAKPGVKQENPLFSLKRSGMDKQLIPVAESTDIKYPGFIQRLNALVFQYGIDDLDASA
ETVVVSSCSKIAKPGKKISTLQEAKSALQITNDDKQNGNITRQKHVVNAYAVGMIAGEEGLFRFQLDDKGKWGNPQLLVK
KVKRMDVRYIYVSGCPEDEDAGKEERFKYTDQFDKSKNAVTPAGVEVLLDSGLNAKIAASSDNSIYAYRINATIRGGNVC
ANRTL

Nucleotide


Download         Length: 978 bp        

>NTDB_id=587036 KWY95_RS06035 WP_003701060.1 1149347..1150324(+) (pilJ) [Neisseria gonorrhoeae strain SK92679]
ATGAAACGTAAAATGCTAAACGTACCAAAGGGCGGTTATGATGGTATGAAGGGTTTTACCATTGTTGAATTTCTGGTTGC
GGGCCTGCTCAGTATAATTGTCCTGATAGCGGTCGTATCGAGTTACTTTACATCCCGGAAATTAAATGATGTGGCAAACG
AGCGTCTTGCCATTCAACAGGATTTGCGGAATGCGGCAACATTAATTGTCCGCGATGCAAGAATGGCGGGGAGCTTCGGT
TGTTTCAATATGTTCGAGCATACTAAAGACGATATTGTTGATTCAAGTAATCAAACTCAATCTAGCCCTGCAAAACCCGG
TGTCAAACAAGAAAATCCCCTTTTTTCCTTAAAAAGGAGCGGCATGGATAAACAACTGATTCCCGTTGCTGAATCCACAG
ATATTAAATATCCGGGTTTTATCCAGCGCCTTAACGCATTGGTTTTCCAATACGGTATCGATGATCTTGATGCGAGTGCT
GAGACTGTTGTAGTCAGCAGCTGTTCCAAAATAGCAAAACCGGGTAAGAAAATATCTACCTTGCAAGAAGCAAAGAGTGC
ATTACAGATTACTAATGATGATAAACAAAATGGAAATATCACCCGTCAGAAACATGTGGTCAATGCCTATGCGGTCGGCA
TGATTGCCGGTGAGGAAGGTTTGTTCCGCTTCCAATTGGATGATAAGGGCAAGTGGGGTAATCCTCAGTTGCTCGTGAAA
AAGGTTAAACGTATGGATGTGCGGTATATTTATGTTTCCGGTTGTCCTGAAGATGAAGATGCCGGCAAAGAGGAGCGATT
CAAATATACGGATCAATTCGACAAATCCAAAAATGCTGTTACGCCTGCCGGGGTGGAGGTTTTATTGGATAGCGGCCTTA
ATGCCAAGATTGCCGCTTCTTCAGACAATAGTATTTATGCTTACCGTATCAATGCGACAATACGCGGGGGAAATGTATGC
GCAAACAGAACACTTTGA

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilJ Neisseria gonorrhoeae MS11

77.134

100

0.778