Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   KWY94_RS01415 Genome accession   NZ_CP078113
Coordinates   275834..277021 (+) Length   395 a.a.
NCBI ID   WP_003694351.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain O2D156     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 270834..282021
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KWY94_RS01400 (KWY94_01400) - 271754..272353 (+) 600 WP_003690290.1 DUF4390 domain-containing protein -
  KWY94_RS01405 (KWY94_01405) - 272353..274473 (+) 2121 WP_003690126.1 HAMP domain-containing histidine kinase -
  KWY94_RS01410 (KWY94_01410) - 274466..275743 (+) 1278 WP_003690124.1 sigma-54 dependent transcriptional regulator -
  KWY94_RS01415 (KWY94_01415) dprA 275834..277021 (+) 1188 WP_003694351.1 DNA-processing protein DprA Machinery gene
  KWY94_RS01420 (KWY94_01420) - 277047..277508 (+) 462 WP_003690120.1 DUF494 domain-containing protein -
  KWY94_RS01425 (KWY94_01425) topA 277586..279892 (+) 2307 WP_218461156.1 type I DNA topoisomerase -
  KWY94_RS11870 - 280113..280241 (+) 129 Protein_271 phosphomethylpyrimidine synthase ThiC -
  KWY94_RS01430 (KWY94_01430) - 280231..280775 (+) 545 Protein_272 IS1595 family transposase -
  KWY94_RS01435 (KWY94_01435) - 280893..281678 (+) 786 Protein_273 opacity family porin -

Sequence


Protein


Download         Length: 395 a.a.        Molecular weight: 41896.97 Da        Isoelectric Point: 6.3096

>NTDB_id=586826 KWY94_RS01415 WP_003694351.1 275834..277021(+) (dprA) [Neisseria gonorrhoeae strain O2D156]
MTEDERFAWLQLAFTPYIGAESFLLLMRSFGSAQNALSAPAEQVAPAVRHKHALEAWRNAEKRALARQAAEAALEWEMRD
GCRLMLLQDEDFPEMLTQGLTAPPVLFLRGNVRLLHKPSAAIVGSRHATPQAMRIAKDFGRALGGKGIPTVSGMASGIDT
AAHQGALEAEGGTVAVWGTGIDRIYPPANKNLAYEIAEKGLIVSEFPIGTRPYAGNFPRRNRLIAALSQVTLVVEAALES
GSLITAGLAAEMGREVMAVPGSIDNPHSKGCHKLIKDGAKLTECLDDILNECPGLLQNTGASSYSINKDTPDTGRRTVQT
AYAPPPAAKMPSEGAAGGTAVGGILDKMGFDPIHPDVLAGQLAMPAADLYAALLELELDGSVAAMPGGRYQRIRT

Nucleotide


Download         Length: 1188 bp        

>NTDB_id=586826 KWY94_RS01415 WP_003694351.1 275834..277021(+) (dprA) [Neisseria gonorrhoeae strain O2D156]
ATGACAGAGGACGAACGTTTCGCGTGGCTGCAATTGGCGTTTACGCCCTATATCGGCGCGGAAAGTTTCCTGCTGCTGAT
GCGCAGTTTCGGCAGCGCGCAAAATGCCTTGTCCGCACCGGCGGAACAGGTTGCCCCGGCGGTGCGGCATAAGCACGCGC
TTGAGGCTTGGCGCAATGCAGAAAAACGCGCTTTGGCGCGGCAGGCGGCAGAAGCGGCGTTGGAATGGGAAATGCGGGAC
GGATGCCGCCTGATGCTGCTTCAGGATGAAGATTTCCCCGAAATGCTGACGCAGGGGCTGACCGCGCCGCCGGTTTTGTT
TTTGCGCGGCAACGTGCGGCTGCTGCACAAGCCTTCCGCCGCCATCGTCGGCAGCCGCCATGCCACGCCGCAGGCGATGC
GGATTGCCAAAGATTTCGGCAGGGCGTTGGGTGGGAAAGGCATTCCTACCGTGTCGGGTATGGCTTCGGGCATCGACACC
GCCGCCCATCAGGGCGCACTGGAGGCAGAAGGCGGCACCGTCGCCGTGTGGGGGACGGGCATAGACCGCATTTATCCGCC
GGCCAACAAAAACCTTGCCTATGAAATCGCCGAAAAAGGGCTGATTGTCAGCGAGTTCCCCATCGGCACGCGGCCGTATG
CCGGCAACTTTCCGCGCCGCAACCGCCTGATTGCCGCGCTGTCGCAGGTTACGCTGGTGGTCGAGGCCGCCTTGGAATCC
GGTTCGCTGATTACCGCCGGCCTGGCGGCAGAAATGGGGCGCGAAGTGATGGCGGTACCCGGTTCGATAGACAACCCCCA
CAGCAAAGGCTGCCACAAACTGATTAAAGACGGAGCGAAACTGACGGAATGTTTGGACGACATCCTGAACGAATGCCCGG
GGCTATTGCAAAATACGGGTGCTTCATCATATTCTATAAATAAGGATACGCCCGACACGGGCCGCCGCACCGTTCAGACG
GCATACGCCCCGCCGCCTGCCGCAAAAATGCCGTCTGAAGGGGCGGCAGGCGGCACAGCCGTCGGCGGCATACTGGATAA
AATGGGTTTCGACCCCATCCATCCCGACGTGCTTGCCGGACAGTTGGCTATGCCTGCCGCAGATTTGTATGCCGCACTGT
TGGAATTGGAATTGGACGGCAGCGTTGCCGCAATGCCCGGCGGCAGATACCAGCGTATCCGAACTTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Neisseria gonorrhoeae MS11

99.747

100

0.997

  dprA Neisseria gonorrhoeae strain FA1090

99.494

100

0.995

  dprA Neisseria meningitidis strain C311

89.673

100

0.901

  dprA Neisseria meningitidis MC58

89.673

100

0.901

  dprA Vibrio cholerae strain A1552

36.962

100

0.37