Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   BTK77_RS00185 Genome accession   NZ_CP078110
Coordinates   36595..38115 (-) Length   506 a.a.
NCBI ID   WP_080322034.1    Uniprot ID   A0AA45C4D2
Organism   Cronobacter sakazakii strain MOD1-H322     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 31595..43115
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BTK77_RS00175 (BTK77_000175) hdfR 35236..36069 (-) 834 WP_104669286.1 HTH-type transcriptional regulator HdfR -
  BTK77_RS00180 (BTK77_000180) - 36177..36515 (+) 339 WP_004387280.1 DUF413 domain-containing protein -
  BTK77_RS00185 (BTK77_000185) comM 36595..38115 (-) 1521 WP_080322034.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  BTK77_RS00190 (BTK77_000190) ilvL 38467..38565 (+) 99 WP_071601137.1 ilv operon leader peptide -
  BTK77_RS00195 (BTK77_000195) ilvG 38704..40350 (+) 1647 WP_004387278.1 acetolactate synthase 2 catalytic subunit -
  BTK77_RS00200 (BTK77_000200) ilvM 40347..40604 (+) 258 WP_004387277.1 acetolactate synthase 2 small subunit -
  BTK77_RS00205 (BTK77_000205) - 40625..41554 (+) 930 WP_004387276.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54959.37 Da        Isoelectric Point: 7.7864

>NTDB_id=586795 BTK77_RS00185 WP_080322034.1 36595..38115(-) (comM) [Cronobacter sakazakii strain MOD1-H322]
MSLSVIHTRAALGVKAPLVTVEVHISAGLPGLTIVGLPETTVKEARDRVRSALINSGYEFPAKKVTINLAPADLPKEGGR
YDLPIAIALLAASEQLSASHLGEYEFVGELALTGALRGVPGAISAAIEALGCKRKIIVAHDNGPEVGLINKEGCLVAHHL
QEVCAFLEGKTQLECAEPSGFEFREPAGDLGEVIGQPQGKRALELTAAGGHNLLFIGPPGTGKTMLASRLNGLLPPLSDQ
EALESAAILSLVNPVSLHHQWRQRPFRAPHHSASLNAMVGGGAIPAPGEISLAHNDVLFLDELPEFERRVLDALREPIES
GQIHISRTRAKLTYPARFQLIAAMNPSPTGHYKGNHNRCSPEQTLRYLGRLSGPFLDRFDLSLEIPLPPPGMLSQAGQTG
ESSAQVRKRVMVSRERQLARQGKLNAMLDNREIRQFCVLSPEDAQWLEAALIKLGLSVRAWQRLLKVARTIADCEQKQWI
GREHLQEALSYRAIDRMLAHLQNMMA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=586795 BTK77_RS00185 WP_080322034.1 36595..38115(-) (comM) [Cronobacter sakazakii strain MOD1-H322]
ATGTCGTTATCAGTTATTCATACCCGTGCTGCGCTTGGGGTTAAGGCGCCGCTCGTGACAGTTGAAGTACATATCAGCGC
CGGGCTGCCCGGCCTGACTATTGTCGGCTTACCGGAAACCACCGTTAAAGAAGCCAGAGATCGCGTACGCAGCGCGCTTA
TCAATAGCGGTTATGAATTTCCGGCTAAAAAGGTAACCATCAATCTGGCACCGGCGGATCTACCTAAAGAAGGTGGGAGA
TATGATTTACCTATCGCCATCGCGCTTCTGGCCGCCTCTGAGCAATTGAGCGCATCCCATCTTGGTGAATATGAATTTGT
AGGTGAGCTGGCGCTTACAGGCGCGCTGAGAGGCGTTCCCGGCGCAATTTCAGCCGCCATTGAGGCTCTGGGTTGTAAAA
GGAAAATTATCGTCGCGCATGATAATGGCCCTGAAGTAGGACTCATCAATAAAGAGGGTTGCCTTGTGGCTCATCATCTA
CAGGAGGTCTGCGCCTTCCTGGAAGGAAAAACACAGCTGGAATGCGCTGAGCCATCCGGCTTTGAATTCAGAGAGCCGGC
GGGAGATCTGGGCGAGGTTATCGGTCAACCACAGGGAAAGCGTGCGCTTGAGTTAACCGCAGCGGGTGGGCATAACCTGC
TTTTTATTGGGCCCCCTGGTACAGGTAAAACCATGCTTGCCAGCAGACTCAATGGGTTACTGCCGCCTCTGAGCGACCAA
GAGGCGCTGGAGAGCGCTGCGATACTCAGCCTGGTCAACCCCGTCTCTTTACACCATCAATGGCGTCAGCGTCCATTCAG
AGCCCCTCACCATAGCGCATCGCTTAACGCCATGGTGGGCGGAGGAGCTATTCCTGCGCCAGGAGAGATCTCACTTGCCC
ATAATGACGTGCTTTTTCTGGATGAATTACCTGAGTTTGAACGTCGCGTACTGGATGCTTTACGCGAGCCGATTGAATCA
GGGCAAATCCATATTTCACGAACCAGGGCGAAATTAACCTATCCCGCGCGTTTTCAGCTTATTGCTGCCATGAATCCCAG
TCCGACAGGGCACTACAAAGGCAATCACAATCGCTGCTCACCGGAGCAAACGCTGCGCTATCTTGGGCGGCTTTCCGGGC
CATTTCTTGACAGGTTTGATCTCTCCCTTGAAATCCCGCTTCCCCCGCCGGGTATGCTTAGCCAGGCAGGACAGACCGGT
GAAAGCAGCGCGCAAGTAAGGAAACGAGTCATGGTTAGCAGAGAACGTCAGCTTGCACGTCAGGGAAAACTCAATGCTAT
GCTGGATAACCGGGAAATACGTCAGTTTTGTGTGCTTAGTCCGGAGGACGCGCAGTGGCTGGAGGCAGCATTAATCAAAC
TGGGGTTGTCGGTTCGCGCCTGGCAGCGTTTACTTAAAGTGGCACGCACGATTGCAGATTGTGAACAGAAACAATGGATT
GGTCGTGAGCATCTTCAGGAGGCACTGAGCTATCGTGCAATAGACAGGATGCTGGCGCATTTACAAAACATGATGGCGTA
G

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

61.1

100

0.615
  comM Vibrio cholerae strain A1552

60.558

99.209

0.601
  comM Glaesserella parasuis strain SC1401

59.763

100

0.599
  comM Vibrio campbellii strain DS40M4

59.96

99.209

0.595
  comM Legionella pneumophila str. Paris

46.906

99.012

0.464
  comM Legionella pneumophila strain ERS1305867

46.906

99.012

0.464
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.615

100

0.439