Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KP002_RS12165 Genome accession   NZ_CP078096
Coordinates   2788275..2788718 (+) Length   147 a.a.
NCBI ID   WP_217286782.1    Uniprot ID   -
Organism   Geomonas subterranea strain RG3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2783275..2793718
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KP002_RS12145 (KP002_12145) - 2785103..2786779 (-) 1677 WP_217286786.1 ribonuclease J -
  KP002_RS12150 (KP002_12150) - 2786854..2787249 (-) 396 WP_217286785.1 hypothetical protein -
  KP002_RS12155 (KP002_12155) - 2787279..2787461 (-) 183 WP_217286784.1 hypothetical protein -
  KP002_RS12160 (KP002_12160) - 2787463..2788158 (-) 696 WP_217286783.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  KP002_RS12165 (KP002_12165) ssb 2788275..2788718 (+) 444 WP_217286782.1 single-stranded DNA-binding protein Machinery gene
  KP002_RS12170 (KP002_12170) - 2788871..2791297 (-) 2427 WP_217286781.1 glucan 1,4-alpha-glucosidase -
  KP002_RS12175 (KP002_12175) fabG 2791363..2792145 (-) 783 WP_217286780.1 3-oxoacyl-ACP reductase FabG -
  KP002_RS12180 (KP002_12180) - 2792175..2792954 (-) 780 WP_217286779.1 MIP/aquaporin family protein -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 16321.14 Da        Isoelectric Point: 5.3193

>NTDB_id=586760 KP002_RS12165 WP_217286782.1 2788275..2788718(+) (ssb) [Geomonas subterranea strain RG3]
MASLNKVMLIGNLGKDPEVRYTAGGTAVASFSLATTDRIKGKDGNWEDKTEWHNITLWARLAEIAGEYLSKGKTVYIEGR
LQTRKWTDKDGKDRYTTEIVGEKMQMLSAKGEGGGQRQGGGRPQQQDYNQGGGYEEPTFNPDDEIPF

Nucleotide


Download         Length: 444 bp        

>NTDB_id=586760 KP002_RS12165 WP_217286782.1 2788275..2788718(+) (ssb) [Geomonas subterranea strain RG3]
ATGGCAAGTCTCAACAAGGTGATGCTCATAGGCAACCTGGGCAAGGACCCCGAGGTGCGCTACACCGCCGGCGGTACCGC
CGTAGCTTCCTTCTCCCTGGCCACCACCGACCGCATCAAGGGGAAGGACGGCAACTGGGAAGACAAGACCGAATGGCACA
ACATCACCCTCTGGGCGCGTCTCGCCGAGATCGCCGGCGAGTACCTCTCCAAGGGGAAGACCGTATATATCGAAGGACGT
CTGCAGACCCGCAAGTGGACCGACAAGGACGGCAAGGACCGCTACACCACCGAGATCGTCGGCGAGAAGATGCAGATGCT
TTCCGCCAAGGGCGAAGGCGGCGGCCAGCGCCAGGGCGGCGGCCGCCCGCAGCAGCAGGACTACAACCAGGGTGGCGGTT
ACGAAGAGCCGACCTTCAACCCGGACGACGAGATCCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

48.315

100

0.585
  ssb Glaesserella parasuis strain SC1401

43.333

100

0.531
  ssb Neisseria meningitidis MC58

48.905

93.197

0.456
  ssb Neisseria gonorrhoeae MS11

48.905

93.197

0.456
  ssbA Bacillus subtilis subsp. subtilis str. 168

32.37

100

0.381