Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   EGT68_RS13915 Genome accession   NZ_CP078042
Coordinates   2920320..2921807 (+) Length   495 a.a.
NCBI ID   WP_125272820.1    Uniprot ID   -
Organism   Acinetobacter junii strain AJ_068     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 2916715..2923075 2920320..2921807 within 0


Gene organization within MGE regions


Location: 2916715..2923075
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGT68_RS13895 (EGT68_013895) - 2916715..2917869 (+) 1155 WP_218999211.1 IS4 family transposase -
  EGT68_RS13900 (EGT68_013900) - 2917929..2919341 (-) 1413 WP_125272821.1 ammonium transporter -
  EGT68_RS13905 (EGT68_013905) glnK 2919409..2919747 (-) 339 WP_000780326.1 P-II family nitrogen regulator -
  EGT68_RS13910 (EGT68_013910) - 2920023..2920250 (+) 228 WP_005403519.1 accessory factor UbiK family protein -
  EGT68_RS13915 (EGT68_013915) comM 2920320..2921807 (+) 1488 WP_125272820.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  EGT68_RS13920 (EGT68_013920) - 2921921..2923075 (+) 1155 WP_218999212.1 IS4 family transposase -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54325.99 Da        Isoelectric Point: 7.7615

>NTDB_id=586486 EGT68_RS13915 WP_125272820.1 2920320..2921807(+) (comM) [Acinetobacter junii strain AJ_068]
MSFAKIYTRGLLGLHAPQIEVEVHISSGLPSLTIVGLPEAAVRESKDRVRSAIINSGFLFPTKRLTINLAPADLPKDGSR
LDLPIALGILIASGQLPENCTEGFEFIGELALDGHLRPTSGALTIAMACQQAKHHLVLPESNVDEANQLEDFQVYPAKHL
QDVCAHFSGSSQIKAAPQRSISSLSQYQYDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLPSILPPLNA
QENLEVASIYSVANAQHHFGQRPFRAPHHTASAIALVGGGSQPKPGEITLAHRGVLFLDELPEFDRKVLEVLRQPLESKE
IVISRAARQMTFPANFQFIAAMNPCPCGYAFNQDSRCQCSPESIQRYQNRISGPLLDRIDLHIDVPPLQAQELQDQKPSE
NSETVRHRVIKAYQQQIKRQQCLNQALSPQLLDQHARLDEGSAKIIEMAQQRLNLSARAYHRVLRVARTIADLAESEMIS
SSHLTEALSYRGSNS

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=586486 EGT68_RS13915 WP_125272820.1 2920320..2921807(+) (comM) [Acinetobacter junii strain AJ_068]
ATGTCTTTTGCAAAAATTTATACAAGGGGATTATTGGGGCTACATGCCCCTCAAATCGAGGTCGAAGTTCATATTAGTTC
TGGCCTACCCTCTTTAACTATCGTGGGTTTACCTGAGGCAGCAGTTCGAGAAAGTAAAGATCGCGTTCGATCTGCAATAA
TTAATAGTGGTTTTCTTTTCCCAACCAAACGCTTAACCATCAATTTAGCACCTGCAGACTTGCCCAAAGATGGGTCACGA
CTTGACCTGCCAATTGCATTGGGGATTTTAATCGCTTCAGGTCAGCTTCCTGAAAATTGTACGGAAGGATTTGAATTTAT
TGGTGAACTTGCTTTGGATGGTCATTTACGTCCAACTTCTGGGGCATTAACTATTGCTATGGCTTGTCAGCAAGCTAAGC
ATCATTTAGTTCTTCCTGAATCAAATGTGGACGAGGCAAATCAACTAGAAGACTTTCAAGTTTATCCTGCCAAACATTTA
CAAGATGTATGTGCACATTTTTCGGGCAGTAGCCAAATAAAAGCCGCACCACAACGATCTATTTCATCATTATCACAATA
TCAATACGATCTTGCTGATGTTAAAGGTCAACTTCGTCCTCGCCGCGCATTAGAAATTGCGGCTGCAGGAGGTCATTCAT
TACTCTTTAAGGGACCACCTGGCACTGGAAAAACATTACTTGCATCTCGACTGCCTTCAATTTTACCCCCTTTGAATGCT
CAAGAAAATTTAGAGGTTGCTAGTATCTATTCCGTAGCAAATGCTCAACATCATTTCGGTCAGCGCCCTTTTCGTGCACC
TCACCATACAGCATCTGCGATCGCTTTGGTTGGTGGAGGCTCTCAACCAAAACCTGGAGAAATTACGCTTGCTCATCGCG
GCGTTTTGTTTTTAGATGAATTACCTGAATTCGACCGCAAAGTGCTTGAAGTTCTGCGCCAACCTTTAGAGTCTAAAGAA
ATCGTAATTTCTCGCGCGGCGAGACAAATGACCTTCCCTGCAAATTTTCAGTTTATCGCTGCAATGAATCCATGCCCTTG
TGGATATGCATTTAATCAAGATAGTCGTTGTCAGTGTTCGCCTGAAAGTATTCAACGTTATCAAAATCGAATTTCAGGTC
CACTTTTGGATCGAATCGATCTGCATATCGATGTTCCACCCTTGCAAGCTCAAGAGCTACAAGACCAAAAACCCTCAGAA
AACTCTGAAACTGTTCGTCATCGAGTGATAAAAGCATATCAACAACAGATCAAAAGACAGCAATGCTTAAACCAAGCGCT
TTCACCCCAACTTTTGGATCAACATGCTCGTTTAGACGAGGGATCTGCAAAAATTATTGAAATGGCACAACAAAGATTAA
ATCTATCGGCCCGTGCTTATCATCGGGTACTTCGCGTTGCAAGAACGATTGCTGACTTAGCTGAGAGTGAGATGATTTCT
AGCTCACATTTAACAGAAGCCTTGTCTTATCGAGGTAGCAATAGCTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

51.606

100

0.519
  comM Glaesserella parasuis strain SC1401

50.4

100

0.509
  comM Vibrio campbellii strain DS40M4

49.899

100

0.499
  comM Haemophilus influenzae Rd KW20

49.299

100

0.497
  comM Legionella pneumophila str. Paris

48.193

100

0.485
  comM Legionella pneumophila strain ERS1305867

48.193

100

0.485
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.618

100

0.463