Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   KV238_RS08470 Genome accession   NZ_CP078012
Coordinates   1742745..1743590 (+) Length   281 a.a.
NCBI ID   WP_012679593.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain SEZ_18-036     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1737745..1748590
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KV238_RS08455 (KV238_08440) - 1739647..1740279 (+) 633 WP_230923521.1 ABC transporter ATP-binding protein -
  KV238_RS08460 (KV238_08445) ylqF 1740872..1741726 (+) 855 WP_012677976.1 ribosome biogenesis GTPase YlqF -
  KV238_RS08465 (KV238_08450) - 1741716..1742489 (+) 774 WP_413777483.1 ribonuclease HII -
  KV238_RS08470 (KV238_08455) dprA 1742745..1743590 (+) 846 WP_012679593.1 DNA-processing protein DprA Machinery gene
  KV238_RS08475 (KV238_08460) topA 1743691..1745823 (+) 2133 WP_230923523.1 type I DNA topoisomerase -
  KV238_RS08480 (KV238_08465) - 1745938..1746585 (+) 648 WP_206156270.1 SatD family protein -
  KV238_RS08485 (KV238_08470) - 1746606..1747319 (+) 714 WP_043040561.1 DUF3307 domain-containing protein -

Sequence

Protein


Download         Length: 281 a.a.        Molecular weight: 31348.27 Da        Isoelectric Point: 8.8540

>NTDB_id=586276 KV238_RS08470 WP_012679593.1 1742745..1743590(+) (dprA) [Streptococcus equi subsp. zooepidemicus strain SEZ_18-036]
MNNFELYKLKKAGLTNLNILNLIDYQQRNNKSLSLRDMAVVSCCKNPVLFIETYKQLNVALLKKEFNQFPSLSILDKQYP
LALREIYNPPVLLFYQGDLSLLEKPKLAVVGSRESSEIGTRSVYKIIKELKNHFVIVSGLARGIDTSAHLACLKAGGQTI
AVIGTGLDRYYPKENHQLQEFLSQRHLVLSEYGAGEAALSYHFPERNRIIAGLSRGVLVVEAKQRSGSLITCQLAMEEGR
DIFVVPDNILNGTSAGCLKLIKDGASCVTHGRDILSEYHYS

Nucleotide


Download         Length: 846 bp        

>NTDB_id=586276 KV238_RS08470 WP_012679593.1 1742745..1743590(+) (dprA) [Streptococcus equi subsp. zooepidemicus strain SEZ_18-036]
ATGAACAATTTTGAACTTTATAAATTAAAAAAGGCTGGGCTGACTAATTTAAATATTCTTAACCTTATTGACTACCAGCA
GCGTAATAATAAGTCTCTATCCCTTAGAGATATGGCAGTGGTTTCTTGCTGCAAAAATCCAGTTTTATTTATTGAAACCT
ACAAGCAATTAAATGTCGCCTTGTTAAAAAAGGAATTCAATCAGTTTCCGAGCTTATCTATCCTAGATAAGCAATACCCA
TTGGCTCTGAGGGAAATCTACAATCCTCCTGTTTTACTCTTTTATCAAGGTGATTTAAGCCTGTTAGAAAAACCTAAGCT
GGCAGTCGTTGGATCTAGAGAATCCAGTGAAATTGGGACGCGGTCTGTTTATAAAATCATTAAAGAGCTTAAGAATCACT
TTGTCATTGTAAGTGGACTTGCTAGAGGTATTGATACCAGTGCTCATCTCGCTTGCTTGAAAGCAGGTGGGCAAACTATA
GCTGTTATCGGGACTGGCCTAGATCGCTACTATCCAAAGGAAAATCACCAGCTACAGGAGTTTTTATCTCAGCGTCATCT
CGTGCTCAGTGAATATGGGGCTGGAGAGGCCGCCTTGTCTTATCATTTCCCTGAAAGAAACCGTATTATCGCAGGTCTTA
GTCGAGGTGTCCTTGTTGTTGAGGCTAAGCAGCGCTCTGGCTCTTTGATTACCTGTCAGCTAGCTATGGAAGAGGGACGT
GATATTTTTGTCGTACCTGACAATATTCTTAATGGGACATCAGCGGGCTGTTTGAAGCTGATCAAAGATGGTGCCAGCTG
TGTCACTCATGGCAGAGACATTCTTTCAGAATACCACTATTCTTAA

Domains

Predicted by InterproScan.

DNA processing protein A sterile alpha motif domain (SAM_DprA)

(1-61)

DNA recombination-mediator protein A (DNA_processg_A)

(71-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Streptococcus mutans UA159

68.929

99.644

0.687
  dprA/cilB/dalA Streptococcus mitis SK321

59.286

99.644

0.591
  dprA/cilB/dalA Streptococcus pneumoniae Rx1

58.929

99.644

0.587
  dprA/cilB/dalA Streptococcus pneumoniae D39

58.929

99.644

0.587
  dprA/cilB/dalA Streptococcus pneumoniae R6

58.929

99.644

0.587
  dprA/cilB/dalA Streptococcus pneumoniae TIGR4

58.929

99.644

0.587
  dprA/cilB/dalA Streptococcus mitis NCTC 12261

58.571

99.644

0.584
  dprA Lactococcus lactis subsp. cremoris KW2

56.94

100

0.569
  dprA Bacillus subtilis subsp. subtilis str. 168

42.4

88.968

0.377