Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   TL13_RS03770 Genome accession   NC_021213
Coordinates   757266..758201 (+) Length   311 a.a.
NCBI ID   WP_015646701.1    Uniprot ID   -
Organism   Streptococcus suis TL13     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 752266..763201
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TL13_RS03755 (TL13_0741) - 753115..754152 (-) 1038 WP_015646698.1 3-deoxy-7-phosphoheptulonate synthase -
  TL13_RS03760 (TL13_0742) - 754453..755046 (-) 594 WP_015646699.1 DUF1361 domain-containing protein -
  TL13_RS03765 (TL13_0743) metG 755199..757202 (+) 2004 WP_015646700.1 methionine--tRNA ligase -
  TL13_RS03770 (TL13_0744) coiA 757266..758201 (+) 936 WP_015646701.1 competence protein CoiA Machinery gene
  TL13_RS03775 (TL13_0745) pepF 758455..760257 (+) 1803 WP_015646702.1 oligoendopeptidase F Regulator
  TL13_RS03780 (TL13_0746) - 760259..760696 (+) 438 WP_024413710.1 hypothetical protein -
  TL13_RS03785 (TL13_0747) - 760718..761266 (+) 549 WP_015646704.1 DUF6630 family protein -
  TL13_RS03790 (TL13_0748) - 761341..762060 (+) 720 WP_044686580.1 O-methyltransferase -
  TL13_RS03795 (TL13_0749) prsA 762122..763084 (+) 963 WP_015646706.1 peptidylprolyl isomerase PrsA -

Sequence

Protein


Download         Length: 311 a.a.        Molecular weight: 36100.70 Da        Isoelectric Point: 8.2775

>NTDB_id=58627 TL13_RS03770 WP_015646701.1 757266..758201(+) (coiA) [Streptococcus suis TL13]
MLVALDEDGQVFNVLENPAPQGRYSCPGCGGLVRYKSGKVLRSHFAHVTLRDCTYFSENESAQHLSLKSCLYSWLINAEQ
VELEKCLPSIGQVADLFVNNSLALEVQCSSLPISRLQLRTQAYHEAGLQVLWLLGKGLWIKERLSKLHKQFLSFSMNMGF
YIWELDDEKKELRLRYLIHEDSRGKVHCLTKFFPFGEGNLLEILRLPFAKQALSHLTCPLDRDLPRYIAQQLYYKSPNWL
ALQAESYSRGENLLTKTAEEWYPHIRLPRSAIGFAQIQKDLTLVYQDFDDYYARVKDKRKQVLFPPIIYMR

Nucleotide


Download         Length: 936 bp        

>NTDB_id=58627 TL13_RS03770 WP_015646701.1 757266..758201(+) (coiA) [Streptococcus suis TL13]
ATGTTAGTTGCACTTGATGAAGATGGACAAGTTTTTAATGTCTTGGAAAATCCTGCGCCGCAAGGTCGCTATTCTTGTCC
AGGTTGTGGAGGACTGGTCCGATACAAATCCGGAAAAGTTCTGCGTTCGCACTTTGCCCATGTAACCCTACGGGATTGCA
CATACTTTTCCGAGAATGAGTCAGCCCAGCATCTGTCACTTAAGTCTTGTCTGTACAGTTGGTTAATCAATGCCGAACAA
GTTGAACTTGAAAAATGCCTGCCTAGTATAGGGCAGGTCGCTGATTTATTTGTTAATAATAGTCTAGCTTTGGAAGTCCA
ATGTTCCAGTCTGCCAATTTCTCGTTTGCAGCTGAGGACGCAAGCCTATCATGAAGCTGGTCTTCAGGTTCTCTGGCTGT
TGGGAAAAGGTCTCTGGATAAAAGAAAGATTAAGTAAATTACACAAGCAATTTCTCTCTTTTAGTATGAATATGGGCTTC
TACATTTGGGAGTTGGATGATGAGAAAAAAGAATTGCGTCTTCGTTACCTTATTCATGAAGACTCACGAGGTAAGGTCCA
CTGTCTGACAAAGTTTTTTCCATTTGGCGAGGGAAATTTATTGGAAATCTTACGTCTGCCTTTTGCCAAGCAAGCTTTAT
CGCATCTTACTTGCCCGTTAGATAGGGATTTGCCTCGCTACATTGCTCAACAGCTTTATTACAAATCCCCCAATTGGTTA
GCCCTGCAGGCAGAGTCTTATAGCCGAGGGGAGAATTTGCTGACAAAGACGGCAGAAGAATGGTATCCACACATCCGTCT
CCCCCGCTCTGCTATTGGCTTTGCCCAAATACAAAAAGATTTAACCCTAGTTTATCAGGATTTTGACGACTATTATGCTA
GGGTCAAAGATAAGAGAAAACAAGTTTTATTTCCGCCTATAATTTATATGCGATAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(21-224)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

52.885

100

0.531
  coiA Streptococcus pneumoniae TIGR4

50.962

100

0.511
  coiA Streptococcus pneumoniae Rx1

50.962

100

0.511
  coiA Streptococcus pneumoniae D39

50.962

100

0.511
  coiA Streptococcus pneumoniae R6

50.962

100

0.511
  coiA Lactococcus lactis subsp. cremoris KW2

40.938

100

0.421

Multiple sequence alignment