Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   TL13_RS03775 Genome accession   NC_021213
Coordinates   758455..760257 (+) Length   600 a.a.
NCBI ID   WP_015646702.1    Uniprot ID   -
Organism   Streptococcus suis TL13     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 753455..765257
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TL13_RS03760 (TL13_0742) - 754453..755046 (-) 594 WP_015646699.1 DUF1361 domain-containing protein -
  TL13_RS03765 (TL13_0743) metG 755199..757202 (+) 2004 WP_015646700.1 methionine--tRNA ligase -
  TL13_RS03770 (TL13_0744) coiA 757266..758201 (+) 936 WP_015646701.1 competence protein CoiA Machinery gene
  TL13_RS03775 (TL13_0745) pepF 758455..760257 (+) 1803 WP_015646702.1 oligoendopeptidase F Regulator
  TL13_RS03780 (TL13_0746) - 760259..760696 (+) 438 WP_024413710.1 hypothetical protein -
  TL13_RS03785 (TL13_0747) - 760718..761266 (+) 549 WP_015646704.1 DUF6630 family protein -
  TL13_RS03790 (TL13_0748) - 761341..762060 (+) 720 WP_044686580.1 O-methyltransferase -
  TL13_RS03795 (TL13_0749) prsA 762122..763084 (+) 963 WP_015646706.1 peptidylprolyl isomerase PrsA -
  TL13_RS03800 (TL13_0750) - 763448..763933 (+) 486 WP_015646707.1 LURP-one-related/scramblase family protein -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69186.39 Da        Isoelectric Point: 4.5572

>NTDB_id=58628 TL13_RS03775 WP_015646702.1 758455..760257(+) (pepF) [Streptococcus suis TL13]
MSKQRYEIEEKYQWDLTTIFPTDDAWEAELADLQAETEKTKEFAGHLLDSAKILLEISETQLGLMRRIEKLYVYASMKND
QDTREGKYQEFQAKAMGLYAAFSQAFAFYEPEFMGITEEQLEAFKAEEPTLVQYSHQFEKLLAAKDHVLSQEVEEVLAAT
SEIFESPAETFSVLDNASLRFPEIADEDGHLVPLSHGNYIHFMESKNREVRQEAYEAMYGTYEQFQHTYAKTLQSNVKVN
NLKARLRKYDSARHASLAANFIPESVYGTLVEAVNKHLPLLHRYINLRKKLLGIDDLKMYDMYTPLSDFSTKISYEDALK
KCQETLEIFGEDYSAIVKEAFENRWIDVHVNEGKRSGAYSGGAYDTNAFMLLNWQDNLDNMYTLIHETGHSLHSMLTRKT
QPYVYGHYSLFLAEIASTTNENLLTEKLLAEVEDDKERFAILNHYLDGFRGTVFRQTQFAEFEQAIYKADQEGQVLTADF
LNELYGQTNEKYYGLSAEENPEIQFEWARIPHFYYNFYVYQYATGFAAASALANKIVNGSPEDKENYLNYLKAGSSDYSL
NVIAKAGVDMTKEDYLNDAFKVFEARLEELEALVEKGVHL

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=58628 TL13_RS03775 WP_015646702.1 758455..760257(+) (pepF) [Streptococcus suis TL13]
ATGTCTAAACAACGTTACGAAATTGAAGAAAAATACCAGTGGGATTTGACCACTATTTTCCCAACCGATGATGCCTGGGA
GGCAGAACTTGCAGATTTACAAGCTGAAACTGAAAAAACAAAAGAATTTGCAGGTCATTTGCTGGACTCAGCTAAAATTC
TCTTAGAAATTAGCGAAACGCAACTCGGTCTTATGCGTCGCATTGAAAAACTCTATGTCTATGCGTCTATGAAGAATGAC
CAAGATACTCGCGAAGGAAAATATCAGGAATTTCAAGCTAAAGCCATGGGCTTGTATGCGGCCTTTTCACAGGCTTTTGC
CTTCTATGAGCCTGAATTTATGGGCATTACTGAAGAGCAGCTGGAGGCCTTTAAGGCAGAAGAGCCTACTCTTGTTCAGT
ACAGCCACCAATTTGAAAAGCTTCTAGCAGCCAAGGACCATGTCCTATCACAAGAGGTAGAAGAAGTATTGGCGGCGACC
AGCGAGATTTTTGAATCACCTGCTGAAACCTTCTCAGTCTTGGACAATGCTAGCCTGCGTTTCCCAGAAATCGCAGATGA
AGACGGTCACTTGGTGCCACTTTCACACGGAAACTACATCCACTTTATGGAGTCTAAAAACCGTGAAGTCCGTCAAGAAG
CCTATGAAGCTATGTACGGTACCTACGAGCAGTTCCAGCATACATACGCTAAGACCCTTCAGTCTAATGTCAAAGTCAAT
AACCTCAAAGCTCGTTTACGGAAGTACGACTCAGCTCGTCACGCATCACTTGCAGCTAATTTCATTCCAGAATCCGTTTA
CGGTACATTAGTGGAAGCTGTGAACAAGCACCTTCCACTCTTGCACCGTTATATCAATTTGCGTAAGAAACTCCTGGGGA
TTGATGATTTGAAAATGTACGATATGTACACACCATTGTCAGATTTCAGCACCAAGATTTCTTACGAAGATGCTCTTAAA
AAATGTCAAGAAACCTTGGAAATCTTCGGCGAAGATTACTCTGCTATCGTAAAAGAAGCCTTCGAAAATCGCTGGATTGA
TGTCCATGTTAATGAAGGAAAACGCTCAGGAGCATATTCAGGAGGTGCCTACGACACCAACGCCTTCATGCTTCTCAACT
GGCAGGATAACTTGGATAATATGTACACCCTTATCCATGAAACAGGGCATTCTCTTCACTCTATGTTGACTCGTAAGACT
CAACCCTATGTCTATGGTCATTATTCCCTCTTCTTGGCAGAAATTGCTTCAACAACCAATGAAAATCTTTTGACAGAAAA
ACTCTTGGCAGAAGTAGAAGATGATAAGGAACGTTTTGCGATTCTTAACCATTACCTAGATGGTTTCCGTGGCACAGTCT
TCCGCCAGACCCAATTTGCCGAGTTTGAACAAGCTATCTATAAGGCAGACCAGGAAGGTCAGGTCTTGACGGCTGATTTC
CTCAATGAATTGTACGGTCAGACTAACGAGAAATACTACGGACTTTCTGCCGAAGAAAATCCAGAAATCCAGTTTGAGTG
GGCTCGTATTCCACACTTCTATTACAATTTCTATGTCTATCAATATGCGACAGGTTTTGCGGCAGCATCAGCTCTGGCAA
ACAAGATTGTCAATGGTAGCCCAGAAGACAAAGAAAACTATCTCAACTACTTGAAGGCTGGTAGCTCAGATTATTCCCTC
AATGTCATCGCTAAGGCTGGCGTAGACATGACCAAGGAAGATTACCTCAATGATGCCTTCAAGGTATTTGAAGCTCGTTT
GGAAGAATTAGAAGCTCTCGTTGAGAAAGGTGTGCACCTCTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-581)

Oligopeptidase F (Peptidase_M3_N)

(112-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

69.333

100

0.693

Multiple sequence alignment