Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB   Type   Regulator
Locus tag   KV238_RS05910 Genome accession   NZ_CP078012
Coordinates   1211998..1213365 (+) Length   455 a.a.
NCBI ID   WP_230923367.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain SEZ_18-036     
Function   transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 1206998..1218365
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KV238_RS05880 (KV238_05880) - 1207597..1208490 (+) 894 WP_230923366.1 helix-turn-helix domain-containing protein -
  KV238_RS05885 (KV238_05885) - 1208842..1208982 (+) 141 WP_012515166.1 hypothetical protein -
  KV238_RS05890 (KV238_05890) - 1209095..1209253 (+) 159 WP_021320463.1 hypothetical protein -
  KV238_RS05895 (KV238_05895) - 1209267..1209413 (+) 147 WP_021320464.1 hypothetical protein -
  KV238_RS05900 (KV238_05900) - 1209436..1209603 (+) 168 WP_012515168.1 class IIb bacteriocin, lactobin A/cerein 7B family -
  KV238_RS05905 (KV238_05905) comA 1209830..1211983 (+) 2154 WP_012515169.1 peptide cleavage/export ABC transporter ComA Regulator
  KV238_RS05910 (KV238_05910) comB 1211998..1213365 (+) 1368 WP_230923367.1 bacteriocin secretion accessory protein Regulator
  KV238_RS05915 (KV238_05915) - 1213874..1214110 (+) 237 WP_024273149.1 hypothetical protein -
  KV238_RS05920 (KV238_05920) nrdF 1214565..1215578 (+) 1014 WP_043040212.1 class 1b ribonucleoside-diphosphate reductase subunit beta -
  KV238_RS05925 (KV238_05925) nrdI 1215580..1215990 (+) 411 WP_012515173.1 class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI -
  KV238_RS05930 (KV238_05930) nrdE 1216036..1218210 (+) 2175 WP_021320467.1 class 1b ribonucleoside-diphosphate reductase subunit alpha -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 50840.97 Da        Isoelectric Point: 5.1918

>NTDB_id=586264 KV238_RS05910 WP_230923367.1 1211998..1213365(+) (comB) [Streptococcus equi subsp. zooepidemicus strain SEZ_18-036]
MNNNILESAEFYNRRYHNFSSRVILPTLLLFLFGVFFLAFAKKEISIISTATVEPNIILSNIQSTSNNTILTNNLKDNKY
VKFGDLLIKYDSRKEGIQQETYQTQLNNLQIQKEQLELLKASIEAGNSQFPEKDNYGYYQTFIDYLNQINTLSANVNQQN
ENVSSQNTAASNQQVEIENAIKGLTSQISDYQSVRSAIQNGTVVDLDNRAYSIYRSYLTQTSSLVDNTDKTAVINQFVAQ
IDSQINQLESSVAGYRIQHAGSGVQQSYSSTLESQLASLKAQSITKVEQELSALSNQITELEGTNKLQKNTSSKTSIVAN
EDGVLHLNQEFIGANIVPEGTIFAQVYPEMKKGTVVKITGYLPSTEISSISIGDTVRFSTKDDNGETLDLIVKLSSIDNA
ATKTKNGNYFKVESKLQLKEKEAQLLKYGLEGKFILITGTKSYLNYYIDKFIGEK

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=586264 KV238_RS05910 WP_230923367.1 1211998..1213365(+) (comB) [Streptococcus equi subsp. zooepidemicus strain SEZ_18-036]
ATGAATAACAATATATTAGAAAGTGCGGAATTTTATAACCGTCGTTACCACAACTTTTCTAGTCGTGTCATTCTACCTAC
TTTGCTGCTTTTCTTGTTTGGTGTTTTCTTCCTAGCATTTGCAAAGAAAGAAATTTCTATTATTTCAACTGCAACAGTTG
AACCAAATATAATTCTTTCCAATATTCAATCTACAAGTAATAATACAATATTAACCAATAATCTAAAAGATAATAAATAT
GTCAAATTTGGAGACTTATTGATAAAATATGATTCAAGAAAAGAAGGTATTCAACAAGAGACCTATCAAACTCAATTAAA
TAATTTACAAATCCAAAAAGAACAGTTAGAGCTATTAAAAGCAAGTATTGAAGCTGGAAACAGTCAATTTCCAGAAAAAG
ATAATTATGGATATTATCAAACATTTATTGACTACTTAAATCAGATAAACACCTTATCAGCCAATGTAAATCAGCAAAAT
GAAAATGTCTCTTCACAAAATACTGCAGCTAGCAATCAGCAAGTAGAAATTGAGAATGCCATCAAAGGTCTCACAAGTCA
AATTTCAGATTATCAATCTGTTCGCTCGGCGATTCAAAATGGAACAGTGGTAGATCTTGATAATCGGGCTTATTCTATCT
ATAGGAGTTATCTAACTCAAACATCGAGTTTGGTAGATAATACTGATAAAACCGCTGTTATTAATCAATTTGTTGCTCAA
ATTGATAGTCAGATCAATCAACTAGAGAGTAGTGTAGCTGGTTATCGGATTCAGCATGCTGGTTCAGGAGTGCAACAATC
TTACTCTTCAACTCTAGAGAGTCAACTGGCTTCCTTAAAAGCGCAAAGCATAACCAAAGTTGAGCAAGAGTTGTCTGCTT
TGTCGAATCAAATTACAGAATTAGAGGGAACAAATAAACTTCAGAAGAACACATCATCTAAGACCTCTATAGTTGCCAAT
GAAGATGGTGTGTTGCATCTTAATCAGGAATTTATTGGTGCAAATATTGTTCCTGAAGGAACAATATTTGCTCAAGTTTA
TCCAGAAATGAAAAAAGGAACTGTTGTAAAAATCACAGGTTATTTACCTTCGACGGAAATATCAAGTATTTCTATTGGAG
ATACAGTACGATTTTCCACGAAAGATGATAATGGCGAAACTCTTGATTTAATAGTTAAATTATCTAGTATTGACAATGCT
GCAACTAAAACAAAAAATGGGAATTATTTTAAAGTTGAATCTAAGTTACAGCTTAAAGAAAAAGAAGCTCAATTATTGAA
ATATGGGCTTGAGGGTAAATTTATTTTAATTACGGGAACAAAAAGTTACTTGAATTACTATATTGATAAATTTATCGGTG
AGAAGTAA

Domains

Predicted by InterproScan.

HlyD family secretion protein (HlyD_3)

(317-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB Streptococcus pneumoniae Rx1

50.442

99.341

0.501
  comB Streptococcus pneumoniae D39

50.442

99.341

0.501
  comB Streptococcus pneumoniae R6

50.442

99.341

0.501
  comB Streptococcus pneumoniae TIGR4

49.558

99.341

0.492
  comB Streptococcus mitis NCTC 12261

49.336

99.341

0.49
  comB Streptococcus mitis SK321

49.115

99.341

0.488
  comB Streptococcus gordonii str. Challis substr. CH1

48.115

99.121

0.477