Detailed information    

insolico Bioinformatically predicted

Overview


Name   coiA   Type   Machinery gene
Locus tag   I872_RS07130 Genome accession   NC_021175
Coordinates   1439701..1440660 (-) Length   319 a.a.
NCBI ID   WP_015605463.1    Uniprot ID   -
Organism   Streptococcus cristatus AS 1.3089     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 1434701..1445660
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I872_RS07110 (I872_07120) - 1435292..1435870 (-) 579 WP_172456450.1 LURP-one-related/scramblase family protein -
  I872_RS07115 (I872_07125) prsA 1436009..1437085 (-) 1077 WP_015605460.1 peptidylprolyl isomerase PrsA -
  I872_RS07120 (I872_07130) - 1437193..1437876 (-) 684 WP_015605461.1 O-methyltransferase -
  I872_RS07125 (I872_07135) pepF 1437878..1439680 (-) 1803 WP_015605462.1 oligoendopeptidase F Regulator
  I872_RS07130 (I872_07140) coiA 1439701..1440660 (-) 960 WP_015605463.1 competence protein CoiA Machinery gene
  I872_RS07135 (I872_07145) - 1440818..1441984 (-) 1167 WP_041826907.1 MFS transporter -
  I872_RS07140 (I872_07150) - 1442064..1443407 (-) 1344 WP_015605465.1 D-alanyl-D-alanine carboxypeptidase -
  I872_RS07145 (I872_07155) nagB 1443513..1444220 (-) 708 WP_015605466.1 glucosamine-6-phosphate deaminase -
  I872_RS07150 (I872_07160) queA 1444537..1445565 (+) 1029 WP_015605467.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -

Sequence


Protein


Download         Length: 319 a.a.        Molecular weight: 37660.29 Da        Isoelectric Point: 9.3689

>NTDB_id=58467 I872_RS07130 WP_015605463.1 1439701..1440660(-) (coiA) [Streptococcus cristatus AS 1.3089]
MLLAKNEEGILLNAMEKQPSHGQQLFCPACSGAVRFKKGRVMRPHFAHISLENCSFYAENESAEHLNLKAGLYSWGTQSQ
EVQVEAFLPEIRQIADLLIDDRIALEVQCSPLSQERLEGRTLSYRQHGYQVLWLLGKKLWLKQSLTRLQKDFLYFSQNMG
FHLWELDEKKQELRLKYLIHEDLHGRAQYKVKSFPFGQGSLLSVLRSPFQKQGLESYLARQDPEICRYVRQQLYYQQPRW
MKLQAQLYQKGDNLLTKSAEDFYPQVRPVQASSFCQITRDLTSYYQHFHRYYQAEKNKQLQIIYPPVFYARISPTFMIK

Nucleotide


Download         Length: 960 bp        

>NTDB_id=58467 I872_RS07130 WP_015605463.1 1439701..1440660(-) (coiA) [Streptococcus cristatus AS 1.3089]
ATGTTGCTTGCAAAAAATGAAGAGGGGATTTTGCTGAATGCGATGGAAAAGCAGCCGTCTCATGGCCAACAACTTTTTTG
TCCGGCTTGTTCGGGGGCAGTCCGCTTCAAAAAAGGAAGGGTCATGCGACCGCATTTTGCGCATATTTCTCTTGAAAACT
GTTCGTTTTATGCGGAAAATGAAAGTGCGGAGCATTTGAACTTGAAAGCTGGACTTTATAGCTGGGGGACGCAAAGCCAA
GAGGTGCAGGTGGAGGCCTTTTTGCCTGAGATAAGGCAGATTGCTGACCTTTTGATAGACGACCGCATAGCACTGGAGGT
CCAATGCAGTCCGCTCAGTCAGGAAAGACTTGAAGGACGGACCCTGTCTTATCGCCAGCATGGCTATCAGGTCCTCTGGC
TCTTGGGCAAGAAATTATGGTTAAAACAGTCTCTGACAAGACTGCAAAAGGACTTTCTTTATTTTAGTCAAAATATGGGC
TTTCATCTTTGGGAATTGGATGAGAAAAAGCAGGAGCTTCGACTTAAATATCTCATTCACGAGGACTTGCATGGACGAGC
TCAGTACAAGGTCAAATCTTTTCCTTTTGGTCAAGGAAGTCTTTTATCTGTCCTACGCAGTCCCTTTCAGAAGCAGGGAT
TAGAAAGCTATCTGGCCCGGCAGGATCCAGAGATTTGTCGCTATGTTCGTCAGCAGCTTTATTACCAGCAGCCTCGATGG
ATGAAGCTCCAAGCTCAGCTCTACCAAAAAGGAGACAATCTTCTGACCAAGTCAGCCGAGGATTTTTATCCGCAGGTTCG
GCCTGTCCAGGCCAGCTCCTTTTGCCAAATAACAAGAGATTTGACGTCCTATTACCAGCACTTTCATCGCTATTATCAGG
CTGAAAAAAATAAGCAGCTTCAAATTATCTATCCACCGGTATTTTATGCGAGGATTTCCCCTACTTTTATGATAAAATAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

54.369

96.865

0.527

  coiA Streptococcus pneumoniae Rx1

53.398

96.865

0.517

  coiA Streptococcus pneumoniae D39

53.398

96.865

0.517

  coiA Streptococcus pneumoniae R6

53.398

96.865

0.517

  coiA Streptococcus pneumoniae TIGR4

53.074

96.865

0.514

  coiA Lactococcus lactis subsp. cremoris KW2

42.105

100

0.426


Multiple sequence alignment