Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   I872_RS07125 Genome accession   NC_021175
Coordinates   1437878..1439680 (-) Length   600 a.a.
NCBI ID   WP_015605462.1    Uniprot ID   -
Organism   Streptococcus cristatus AS 1.3089     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1432878..1444680
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I872_RS07110 (I872_07120) - 1435292..1435870 (-) 579 WP_172456450.1 LURP-one-related/scramblase family protein -
  I872_RS07115 (I872_07125) prsA 1436009..1437085 (-) 1077 WP_015605460.1 peptidylprolyl isomerase PrsA -
  I872_RS07120 (I872_07130) - 1437193..1437876 (-) 684 WP_015605461.1 O-methyltransferase -
  I872_RS07125 (I872_07135) pepF 1437878..1439680 (-) 1803 WP_015605462.1 oligoendopeptidase F Regulator
  I872_RS07130 (I872_07140) coiA 1439701..1440660 (-) 960 WP_015605463.1 competence protein CoiA Machinery gene
  I872_RS07135 (I872_07145) - 1440818..1441984 (-) 1167 WP_041826907.1 MFS transporter -
  I872_RS07140 (I872_07150) - 1442064..1443407 (-) 1344 WP_015605465.1 D-alanyl-D-alanine carboxypeptidase -
  I872_RS07145 (I872_07155) nagB 1443513..1444220 (-) 708 WP_015605466.1 glucosamine-6-phosphate deaminase -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69132.22 Da        Isoelectric Point: 4.5540

>NTDB_id=58466 I872_RS07125 WP_015605462.1 1437878..1439680(-) (pepF) [Streptococcus cristatus AS 1.3089]
MAKQRNEIEEKYTWDLSTIFPTDEAFEAELAQVSEEVKKAASLAGHLLDSADSLLTTTEIQLDLMRRIEKLYSYAHMKND
QDTRVAKYQEYQAKGMTLYSEFGQSFAFYEPEFMAITEEQYQAFLAEQPGLQLYQHYFDKLLKKKAHILTQREEELLAGA
GEIFGAAGETFAILDNADIVFPMVHDEDGNEVQLSHGNYITLVESKNREVRKEAYEALYSVYEQYQHTYAKTLQTNVKVH
NYNAKVRKFSSAREAALSADFIPESVYDSLVSAVNKHLPLLQRYIALRAKILGISDLKMYDMYTPLSETDYKFTYEEALA
KSEEVLAILGEDYLSRVKTAFSERWIDVHENQGKRSGAYSGGSYDTNAFMLLNWQDTLDNLFTLVHETGHSMHSSYTRET
QPYVYGDYSIFLAEIASTTNENILTEKLLEEVEDDATRFAILNHFLDGFRGTVFRQTQFAEFEHAIHKADQEGQVLTSEF
LNELYADLNEKYYGLKKEDNPQIQYEWARIPHFYYDYYVFQYSTGFAAASALAEKIVHGSQEDKDKYLDYLKAGNSDYPL
NVIKKAGVDMEKEDYLNAAFAVFERRLDEFEALVEKLGMA

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=58466 I872_RS07125 WP_015605462.1 1437878..1439680(-) (pepF) [Streptococcus cristatus AS 1.3089]
ATGGCAAAACAAAGAAATGAAATTGAAGAAAAATATACTTGGGATTTGAGCACTATTTTCCCAACAGATGAAGCCTTTGA
AGCAGAATTGGCGCAGGTTTCAGAAGAAGTGAAGAAGGCAGCTAGTCTGGCTGGACATTTGCTGGATTCAGCAGATAGTC
TTTTGACAACGACGGAAATCCAGTTGGACTTGATGCGTCGGATTGAAAAACTTTATTCTTATGCTCACATGAAGAATGAC
CAGGATACTCGTGTAGCCAAGTATCAAGAATATCAGGCTAAGGGGATGACTCTTTATAGCGAATTCGGACAAAGCTTTGC
CTTCTATGAGCCCGAATTTATGGCGATTACAGAAGAACAATACCAAGCTTTCTTAGCTGAGCAGCCAGGTTTGCAACTTT
ACCAGCATTATTTTGACAAGCTTTTGAAAAAGAAAGCCCACATTCTGACACAGCGTGAAGAGGAGCTACTGGCCGGTGCT
GGTGAAATCTTTGGTGCAGCGGGCGAAACTTTTGCTATCTTAGATAATGCAGATATTGTCTTCCCGATGGTGCATGACGA
AGATGGAAATGAAGTTCAGCTTAGCCACGGCAACTATATCACCTTGGTCGAGTCTAAGAACCGAGAGGTCCGTAAGGAAG
CTTACGAGGCTCTCTACAGCGTCTACGAGCAGTACCAGCATACCTATGCCAAAACTCTGCAGACCAATGTCAAGGTTCAC
AATTACAATGCGAAAGTCCGCAAGTTTTCATCTGCCCGTGAAGCGGCCTTGTCAGCGGACTTTATTCCAGAAAGTGTTTA
TGATAGCCTAGTTTCAGCTGTCAATAAGCATTTGCCTCTTTTGCAGCGTTATATCGCTTTACGAGCGAAGATTTTAGGCA
TTTCTGATTTGAAGATGTATGATATGTACACACCTTTGTCAGAGACAGACTACAAGTTCACTTATGAGGAAGCCTTGGCT
AAGTCTGAGGAAGTTCTGGCTATTCTGGGTGAGGATTATTTGAGCAGAGTCAAGACAGCTTTTTCAGAGCGCTGGATTGA
TGTTCATGAAAATCAAGGCAAGCGCTCAGGGGCATACTCAGGGGGTTCTTACGATACCAATGCCTTTATGTTGCTTAACT
GGCAGGACACGCTAGACAATCTCTTTACCTTGGTGCACGAGACGGGTCACAGTATGCACTCCAGCTATACTCGTGAGACC
CAGCCCTATGTCTATGGAGACTATTCTATCTTCTTAGCTGAGATTGCTTCAACGACCAATGAAAACATCCTGACAGAGAA
GCTTTTGGAAGAAGTAGAAGATGATGCAACCCGCTTTGCTATCCTCAATCACTTCTTAGATGGCTTCCGAGGTACGGTCT
TCCGTCAAACCCAGTTTGCTGAGTTTGAGCATGCTATCCACAAGGCTGACCAAGAAGGTCAAGTTTTGACCAGCGAGTTT
CTAAATGAACTCTATGCTGACTTGAATGAGAAATACTACGGCTTGAAAAAAGAAGACAATCCGCAGATTCAGTACGAGTG
GGCTCGGATTCCGCATTTCTACTATGATTACTATGTTTTCCAATACTCTACAGGCTTTGCAGCCGCTTCTGCCTTGGCTG
AAAAGATTGTCCATGGCAGTCAGGAAGACAAGGACAAGTATCTGGACTATCTGAAAGCCGGAAACTCTGACTATCCGCTC
AATGTCATCAAAAAAGCGGGTGTTGATATGGAAAAAGAAGACTACCTAAATGCTGCTTTTGCTGTCTTTGAGCGTCGCCT
GGACGAATTCGAAGCCTTGGTAGAAAAGTTGGGAATGGCATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-181)

Peptidase family M3 (Peptidase_M3)

(202-581)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

69.128

99.333

0.687

Multiple sequence alignment