Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   I872_RS06065 Genome accession   NC_021175
Coordinates   1213541..1214206 (-) Length   221 a.a.
NCBI ID   WP_015605257.1    Uniprot ID   A0A512AC44
Organism   Streptococcus cristatus AS 1.3089     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1208541..1219206
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I872_RS06050 (I872_06035) - 1208938..1209610 (-) 673 Protein_1170 cystathionine gamma-synthase -
  I872_RS06055 (I872_06040) - 1209643..1212765 (-) 3123 WP_015605255.1 DEAD/DEAH box helicase -
  I872_RS06060 (I872_06045) hpf 1212917..1213459 (-) 543 WP_015605256.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  I872_RS06065 (I872_06050) comFC/cflB 1213541..1214206 (-) 666 WP_015605257.1 ComF family protein Machinery gene
  I872_RS06070 (I872_06055) comFA/cflA 1214203..1215504 (-) 1302 WP_041826810.1 DEAD/DEAH box helicase Machinery gene
  I872_RS06075 (I872_06060) - 1215561..1216196 (+) 636 WP_015605259.1 YigZ family protein -
  I872_RS06080 (I872_06065) cysK 1216313..1217242 (+) 930 WP_015605260.1 cysteine synthase A -
  I872_RS06085 (I872_06070) - 1217293..1217655 (-) 363 WP_015605261.1 S1 RNA-binding domain-containing protein -
  I872_RS06090 (I872_06075) - 1217655..1219055 (-) 1401 WP_015605262.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25504.54 Da        Isoelectric Point: 8.1553

>NTDB_id=58452 I872_RS06065 WP_015605257.1 1213541..1214206(-) (comFC/cflB) [Streptococcus cristatus AS 1.3089]
MRNCLLCSQAVEENRTFSSLILLQKEKYTICNHCRAGFEAISSIHCPRCWKEGEAEVCSDCQTWEAQGYLVQHQACFLYN
DLMKDYFSKYKFQGDYLLRFVFAEVLKKSLGNFKKYTLVPIPVSLEKYQSRGFNQVEGFLQATGLPYKHLLEKQDVLAQS
SKNRQERLKSQQCFTLAKDVLLPEKILLIDDVYTTGKTLQLARELLLEAGVKEVLTFSLAR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=58452 I872_RS06065 WP_015605257.1 1213541..1214206(-) (comFC/cflB) [Streptococcus cristatus AS 1.3089]
ATGAGAAATTGCCTGTTATGCAGCCAAGCAGTCGAAGAAAATAGGACTTTTTCTTCCTTGATTTTATTGCAAAAAGAAAA
ATATACAATTTGTAACCATTGTCGGGCAGGATTTGAAGCTATTTCCTCTATCCATTGCCCACGCTGCTGGAAGGAGGGAG
AGGCGGAAGTCTGTTCGGATTGTCAAACCTGGGAAGCGCAAGGCTATTTAGTTCAGCATCAGGCCTGTTTTCTTTATAAT
GACTTGATGAAGGACTACTTCAGCAAATACAAGTTTCAAGGGGATTATCTTCTAAGATTTGTTTTTGCGGAAGTTCTCAA
AAAAAGTCTCGGAAACTTCAAAAAATATACTCTGGTTCCTATTCCAGTCAGTCTTGAAAAATACCAAAGTCGAGGTTTTA
ATCAGGTAGAAGGCTTCTTGCAAGCTACTGGTTTGCCTTATAAACATTTGCTTGAAAAGCAGGATGTGCTTGCTCAATCC
AGTAAAAATCGCCAAGAACGTTTAAAAAGCCAGCAATGTTTTACATTGGCAAAAGATGTCCTCCTACCAGAAAAAATTCT
ACTGATAGACGATGTGTATACGACTGGAAAAACCTTGCAATTGGCTCGAGAATTATTGCTGGAAGCAGGTGTGAAAGAAG
TTTTGACATTTTCACTCGCAAGATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A512AC44

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus pneumoniae Rx1

50

98.643

0.493
  comFC/cflB Streptococcus pneumoniae D39

50

98.643

0.493
  comFC/cflB Streptococcus pneumoniae R6

50

98.643

0.493
  comFC/cflB Streptococcus pneumoniae TIGR4

50

98.643

0.493
  comFC/cflB Streptococcus mitis SK321

49.541

98.643

0.489
  comFC/cflB Streptococcus mitis NCTC 12261

49.541

98.643

0.489

Multiple sequence alignment